Cluster no. 69

Cluster no. 69

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Cluster is part of supercluster: 21

Cluster characteristics:

size	1673
size_real	1673
ecount	7858
supercluster	21
annotations_summary	7.35% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 6.52% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT 3.53% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG 2.27% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 0.24% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH 0.18% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.18% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase 0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.06% organelle/plastid
pair_completeness	0.622696411251212
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000597728631201434
satellite_probability	5.75854876097884e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	537
S9	577
S7	559

comparative analysis - number of edges between species:

	S8	S9	S7
S8	798	862	847
S9	862	949	910
S7	847	910	873

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.998	0.993	1.010
S9	0.993	1.010	1.000
S7	1.010	1.000	0.991

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.0006

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 3 0.0018

SIRE Ty1-GAG SIRE Ty1-GAG 59 0.0353

SIRE Ty1-INT SIRE Ty1-INT 123 0.0735

Ivana Ty1-PROT Ivana Ty1-PROT 3 0.0018

SIRE Ty1-PROT SIRE Ty1-PROT 38 0.0227

Ivana Ty1-RH Ivana Ty1-RH 4 0.0024

Ale Ty1-RT Ale Ty1-RT 1 0.0006

SIRE Ty1-RT SIRE Ty1-RT 109 0.0652

clusters connected through mates:

Cluster	Number of shared read pairs	k

215	17	0.08
171	9	0.0421
1	5	0.00173
2590	4	0.0203
3840	4	0.0204
16	3	0.00136
1160	3	0.0152
1340	3	0.0151
1690	3	0.0152
2080	3	0.0152
2640	3	0.0152
2920	3	0.0153
4060	3	0.0153
5680	3	0.0153
6880	3	0.0153
23	2	0.00176
29	2	0.00138
36	2	0.00239
828	2	0.0101
1080	2	0.01
1360	2	0.0101
1860	2	0.0101
3000	2	0.0102
4040	2	0.0102
6630	2	0.0102
8650	2	0.0102
9700	2	0.0102
9760	2	0.0102
14700	2	0.0102
17700	2	0.0102
2	1	0.000463
3	1	0.000312
6	1	0.000368
9	1	0.000438
10	1	0.000957
13	1	0.000407
14	1	0.000952
15	1	0.000796
18	1	0.000853
20	1	0.000482
22	1	0.000624
25	1	0.00165
26	1	0.000515
34	1	0.0021
47	1	0.00259
59	1	0.00106
60	1	0.00194
61	1	0.00144
63	1	0.00132
70	1	0.00202
71	1	0.00224
73	1	0.00211
88	1	0.0039
90	1	0.00295
104	1	0.00325
121	1	0.00447
169	1	0.00471
178	1	0.00496
333	1	0.00485
482	1	0.00498
654	1	0.00496
1070	1	0.00509
1070	1	0.00509
1760	1	0.00506
1820	1	0.00506
2100	1	0.00509
2110	1	0.00509
2470	1	0.00508
2490	1	0.0051
2580	1	0.00508
2640	1	0.0051
3490	1	0.00509
3720	1	0.00509
4130	1	0.00509
4630	1	0.0051
4790	1	0.0051
5520	1	0.0051
6450	1	0.0051
6720	1	0.0051
7110	1	0.0051
8950	1	0.00512
10200	1	0.00512
10400	1	0.00512
11400	1	0.00512
11800	1	0.00512
11800	1	0.00512
15700	1	0.00512
17200	1	0.00512
19300	1	0.00512
20400	1	0.00512
20400	1	0.00512
22100	1	0.00512
22400	1	0.00512
25400	1	0.00512
25900	1	0.00512

CL69 ----> CL215

No. of shared pairs: :17