Cluster no. 19

Cluster no. 19

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Cluster is part of supercluster: 1

Cluster characteristics:

size	6977
size_real	6977
ecount	2164605
supercluster	1
annotations_summary	0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
pair_completeness	0.298288053591366
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0781138024939086
satellite_probability	1.51634527750951e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2260
S9	2350
S7	2370

comparative analysis - number of edges between species:

	S8	S9	S7
S8	228000	236000	238000
S9	236000	244000	246000
S7	238000	246000	250000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	1.000	0.999
S9	1.000	1.000	0.998
S7	0.999	0.998	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Angela Ty1-RT Angela Ty1-RT 1 0.00014

Tcn1 Ty3-INT Tcn1 Ty3-INT 1 0.00014

TatV Ty3-aRH TatV Ty3-aRH 1 0.00014

clusters with similarity:

Cluster	Number of similarity hits

20	78900
52	43200
6	39700
41	1460
9	64
43	12
537	7
48	3
1150	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

6	1190	0.271
20	1050	0.278
52	619	0.211
41	354	0.124
9	204	0.0513
5	29	0.00639
43	26	0.0102
16	13	0.00334
13	10	0.00241
537	10	0.00528
1	9	0.00196
12	7	0.0025
63	7	0.00286
2	5	0.0013
24	5	0.00163
26	5	0.00138
91	5	0.00248
4	4	0.00092
23	4	0.00141
48	4	0.00146
3	3	0.000613
7	2	0.000731
8	2	0.000596
15	2	0.000679
18	2	0.000699
21	2	0.000788
22	2	0.000607
28	2	0.000834
33	2	0.000873
36	2	0.000791
61	2	0.000839
1950	2	0.00106
3200	2	0.00106
14300	2	0.00106
10	1	0.000365
14	1	0.000365
29	1	0.000319
40	1	0.000412
54	1	0.000459
59	1	0.000379
60	1	0.000453
65	1	0.000467
75	1	0.000467
90	1	0.000493
97	1	0.000511
103	1	0.000521
159	1	0.000521
182	1	0.000524
190	1	0.000526
493	1	0.000528
698	1	0.000529
1360	1	0.00053
1520	1	0.00053
3950	1	0.00053
4300	1	0.00053
5340	1	0.00053
6040	1	0.00053
7130	1	0.00053
8080	1	0.00053
11200	1	0.00053
11700	1	0.00053
12500	1	0.00053
15400	1	0.00053
20700	1	0.00053
23600	1	0.00053

CL19 ----> CL6

No. of shared pairs: :1193

CL19 ----> CL20

No. of shared pairs: :1048

CL19 ----> CL52

No. of shared pairs: :619

CL19 ----> CL41

No. of shared pairs: :354

CL19 ----> CL9

No. of shared pairs: :204

CL19 ----> CL5

No. of shared pairs: :29

CL19 ----> CL43

No. of shared pairs: :26

CL19 ----> CL16

No. of shared pairs: :13

CL19 ----> CL13

No. of shared pairs: :10

CL19 ----> CL537

No. of shared pairs: :10