Cluster no. 17

Cluster no. 17

Go back to cluster table

Cluster is part of supercluster: 2

Cluster characteristics:

size	7309
size_real	7309
ecount	439742
supercluster	2
annotations_summary	0.12% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.11% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
pair_completeness	0.61524861878453
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0339307702832125
satellite_probability	8.45426015332044e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2360
S9	2520
S7	2430

comparative analysis - number of edges between species:

	S8	S9	S7
S8	46200	49000	47400
S9	49000	52200	50200
S7	47400	50200	48200

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	0.998	1.000
S9	0.998	1.000	1.000
S7	1.000	1.000	0.998

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tork Ty1-GAG Tork Ty1-GAG 1 0.00014

Ale Ty1-RT Ale Ty1-RT 8 0.00109

Tekay Ty3-INT Tekay Ty3-INT 9 0.00123

clusters with similarity:

Cluster	Number of similarity hits

22	2300
37	1860
12	1810
51	559
30	205
54	172
7	108
15	99
28	41
67	38
39	10
23	7
253	2
335	2
13	1
186	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

22	497	0.218
37	284	0.192
51	271	0.238
54	119	0.102
15	76	0.0393
30	73	0.049
67	39	0.0367
12	26	0.0146
1	18	0.00504
7	18	0.0105
39	15	0.00893
28	13	0.0094
23	11	0.00606
13	7	0.00223
253	7	0.00791
186	6	0.00678
335	6	0.00685
1190	6	0.00686
16	5	0.00174
71	4	0.00356
1230	4	0.00457
2	2	0.000705
3	2	0.000515
6	2	0.000589
21	2	0.00131
60	2	0.00168
87	2	0.00199
92	2	0.00208
932	2	0.00229
2800	2	0.00229
7200	2	0.00229
13300	2	0.00229
16800	2	0.00229
23300	2	0.00229
9	1	0.000338
10	1	0.000581
14	1	0.000579
18	1	0.000541
24	1	0.000488
25	1	0.000781
29	1	0.000471
36	1	0.000661
38	1	0.000579
44	1	0.00084
47	1	0.000942
50	1	0.000912
56	1	0.000659
70	1	0.000855
73	1	0.000869
80	1	0.000912
95	1	0.00106
146	1	0.00112
157	1	0.00114
179	1	0.00112
281	1	0.00114
343	1	0.00114
394	1	0.00113
559	1	0.00114
860	1	0.00114
2320	1	0.00115
2440	1	0.00115
3620	1	0.00115
4200	1	0.00115
4920	1	0.00115
5080	1	0.00115
5660	1	0.00115
6380	1	0.00115
7440	1	0.00115
14000	1	0.00115
15400	1	0.00115
15900	1	0.00115
16800	1	0.00115
16900	1	0.00115
20600	1	0.00115
25500	1	0.00115

CL17 ----> CL22

No. of shared pairs: :497

CL17 ----> CL37

No. of shared pairs: :284

CL17 ----> CL51

No. of shared pairs: :271

CL17 ----> CL54

No. of shared pairs: :119

CL17 ----> CL15

No. of shared pairs: :76

CL17 ----> CL30

No. of shared pairs: :73

CL17 ----> CL67

No. of shared pairs: :39

CL17 ----> CL12

No. of shared pairs: :26

CL17 ----> CL1

No. of shared pairs: :18

CL17 ----> CL7

No. of shared pairs: :18

CL17 ----> CL39

No. of shared pairs: :15

CL17 ----> CL28

No. of shared pairs: :13

CL17 ----> CL23

No. of shared pairs: :11