Cluster no. 182

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Cluster is part of supercluster: 126

Cluster characteristics:

size 78
size_real 78
ecount 193
supercluster 126
annotations_summary 1.28% Class_I/LINE:LINE-ENDO
1.28% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness 0.238095238095238
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0128205128205128
satellite_probability 1.0516263740795e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 26
S9 23
S7 29
comparative analysis - number of edges between species:
S8 S9 S7
S8 13.0 25 25.5
S9 25.0 20 18.0
S7 25.5 18 23.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.622 1.210 1.170
S9 1.210 0.973 0.829
S7 1.170 0.829 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-ENDO LINE LINE-ENDO 1 0.013
MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.013

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2270 4 0.151
1460 3 0.113
1110 2 0.0727
14300 2 0.08
19 1 0.000524
1600 1 0.0392
3130 1 0.04
3880 1 0.04
4190 1 0.0385
4730 1 0.0392
9420 1 0.04
9720 1 0.04
9780 1 0.04
18000 1 0.04