Cluster no. 144

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Cluster is part of supercluster: 89

Cluster characteristics:

size 126
size_real 126
ecount 441
supercluster 89
annotations_summary 9.52% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
1.59% Class_I/LTR/Ty1_copia/Angela:Ty1-PROT
pair_completeness 0.4
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00793650793650794
satellite_probability 1.08796458838458e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 43
S9 32
S7 51
comparative analysis - number of edges between species:
S8 S9 S7
S8 39.0 35.0 63.5
S9 35.0 31.0 44.5
S7 63.5 44.5 85.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.91 1.02 1.06
S9 1.02 1.12 0.92
S7 1.06 0.92 1.01

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-INT Angela Ty1-INT 12 0.095
Angela Ty1-PROT Angela Ty1-PROT 2 0.016

clusters connected through mates:

Cluster Number of shared
read pairs		 k
247 15 0.319
168 11 0.204
13400 2 0.0714
13 1 0.000437
16 1 0.000492
102 1 0.00962
439 1 0.0267
24300 1 0.0357

CL144 ----> CL247

image

No. of shared pairs: :15

CL144 ----> CL168

image

No. of shared pairs: :11