Cluster no. 121

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Cluster is part of supercluster: 66

Cluster characteristics:

size 202
size_real 202
ecount 1960
supercluster 66
annotations_summary 0.50% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness 0.553846153846154
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00495049504950495
satellite_probability 1.46614129999921e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 61
S9 74
S7 67
comparative analysis - number of edges between species:
S8 S9 S7
S8 207 226 192
S9 226 252 230
S7 192 230 205
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.040 1.000 0.959
S9 1.000 0.984 1.020
S7 0.959 1.020 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RH Ale Ty1-RH 1 0.005

clusters connected through mates:

Cluster Number of shared
read pairs		 k
111 7 0.0828
776 5 0.149
4870 3 0.0984
1 1 0.000367
13 1 0.000436
21 1 0.00147
69 1 0.00447
163 1 0.023
329 1 0.0222
5890 1 0.0328
21100 1 0.0333