Cluster no. 40

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Cluster is part of supercluster: 1

Cluster characteristics:

size 4228
size_real 4228
ecount 69973
supercluster 1
annotations_summary 0.38% organelle/mitochondria
0.05% organelle/plastid
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
pair_completeness 0.591268347760632
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0208234737340274
satellite_probability 5.66753510169658e-20
consensus None
TAREAN_annotation Other
orientation_score 0.999985716122213

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1420
S9 1400
S7 1410
comparative analysis - number of edges between species:
S8 S9 S7
S8 7020 7780 7550
S9 7780 8310 8060
S7 7550 8060 7900
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.984 1.010 1.010
S9 1.010 0.998 0.993
S7 1.010 0.993 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 16 0.00378
plastid plastid 2 0.00047
Tork Ty1-INT Tork Ty1-INT 1 0.00024
TatV Ty3-INT TatV Ty3-INT 1 0.00024

clusters with similarity:

Cluster Number of similarity hits
27 227
29 137
18 45
35 24
38 7

clusters connected through mates:

Cluster Number of shared
read pairs		 k
27 207 0.104
29 67 0.0373
35 26 0.0176
18 10 0.00658
8 7 0.00347
13 7 0.0025
640 7 0.0128
743 5 0.00909
1090 5 0.00917
1090 5 0.00913
1360 5 0.00916
1 4 0.00123
24 4 0.00232
2 3 0.0012
12 3 0.00206
38 3 0.00214
2260 3 0.0055
3890 3 0.0055
4710 3 0.00551
5330 3 0.00551
6530 3 0.00551
6960 3 0.00551
6 2 0.000652
7 2 0.00143
16 2 0.000784
934 2 0.00367
1160 2 0.00367
1960 2 0.00367
2860 2 0.00367
2890 2 0.00367
3340 2 0.00367
3490 2 0.00367
3830 2 0.00368
3930 2 0.00368
4750 2 0.00367
5300 2 0.00367
5920 2 0.00367
6670 2 0.00367
6920 2 0.00367
7620 2 0.00368
8320 2 0.00368
9430 2 0.00368
9450 2 0.00368
9950 2 0.00368
10800 2 0.00368
11100 2 0.00368
12000 2 0.00368
13500 2 0.00368
14400 2 0.00368
15000 2 0.00368
16200 2 0.00368
18100 2 0.00368
18100 2 0.00368
23300 2 0.00368
23400 2 0.00368
23500 2 0.00368
26000 2 0.00368
3 1 0.000281
4 1 0.000333
19 1 0.000412
21 1 0.000836
22 1 0.000513
23 1 0.000673
26 1 0.000437
41 1 0.000663
42 1 0.00115
50 1 0.0013
52 1 0.000628
59 1 0.000773
68 1 0.00129
73 1 0.00122
114 1 0.00165
123 1 0.00171
388 1 0.00181
1060 1 0.00182
2100 1 0.00183
2970 1 0.00183
2980 1 0.00183
3020 1 0.00183
3210 1 0.00183
3220 1 0.00184
3520 1 0.00183
3590 1 0.00183
3600 1 0.00183
3980 1 0.00183
4090 1 0.00183
4590 1 0.00184
4760 1 0.00184
5080 1 0.00184
5240 1 0.00184
5400 1 0.00184
5970 1 0.00184
6650 1 0.00184
6750 1 0.00184
7100 1 0.00184
7310 1 0.00184
7590 1 0.00184
8160 1 0.00184
8210 1 0.00184
8460 1 0.00184
8560 1 0.00184
8670 1 0.00184
9200 1 0.00184
9540 1 0.00184
9610 1 0.00184
10200 1 0.00184
10500 1 0.00184
10900 1 0.00184
11100 1 0.00184
11500 1 0.00184
11600 1 0.00184
11800 1 0.00184
11800 1 0.00184
13100 1 0.00184
13100 1 0.00184
15900 1 0.00184
16100 1 0.00184
17100 1 0.00184
17200 1 0.00184
17700 1 0.00184
18800 1 0.00184
19100 1 0.00184
19500 1 0.00184
19600 1 0.00184
19800 1 0.00184
19900 1 0.00184
20100 1 0.00184
20300 1 0.00184
20900 1 0.00184
21200 1 0.00184
21200 1 0.00184
22100 1 0.00184
22400 1 0.00184
22500 1 0.00184
22600 1 0.00184
23200 1 0.00184
23400 1 0.00184
23800 1 0.00184
24300 1 0.00184
24400 1 0.00184
24600 1 0.00184
25400 1 0.00184

CL40 ----> CL27

image

No. of shared pairs: :207

CL40 ----> CL29

image

No. of shared pairs: :67

CL40 ----> CL35

image

No. of shared pairs: :26

CL40 ----> CL18

image

No. of shared pairs: :10