Cluster no. 77

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Cluster is part of supercluster: 27

Cluster characteristics:

size 1357
size_real 1357
ecount 8636
supercluster 27
annotations_summary 0.15% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.07% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
pair_completeness 0.792602377807133
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000736919675755343
satellite_probability 3.20953330666128e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 410
S9 482
S7 465
comparative analysis - number of edges between species:
S8 S9 S7
S8 752 946 904
S9 946 1100 1060
S7 904 1060 959
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.959 1.010 1.030
S9 1.010 0.981 1.010
S7 1.030 1.010 0.966

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RT Ale Ty1-RT 2 0.00147
TAR Ty1-RT TAR Ty1-RT 1 0.00074

clusters with similarity:

Cluster Number of similarity hits
47 14

clusters connected through mates:

Cluster Number of shared
read pairs		 k
47 26 0.0963
814 10 0.118
314 6 0.069
622 5 0.0581
294 4 0.0449
498 4 0.0457
1800 4 0.0497
2910 4 0.0497
1850 3 0.0368
2250 3 0.037
3160 3 0.0373
3230 3 0.0373
6530 3 0.0375
6760 3 0.0375
1 2 0.00072
1530 2 0.0247
3610 2 0.0248
8430 2 0.0252
23200 2 0.0252
4 1 0.000394
13 1 0.000427
22 1 0.000673
23 1 0.000978
26 1 0.000548
509 1 0.0116
532 1 0.0119
1220 1 0.0122
1700 1 0.0122
3520 1 0.0126
3530 1 0.0124
5400 1 0.0125
5820 1 0.0127
7410 1 0.0126
19800 1 0.0126
20700 1 0.0126
21100 1 0.0126

CL77 ----> CL47

image

No. of shared pairs: :26

CL77 ----> CL814

image

No. of shared pairs: :10