Cluster no. 20

Cluster no. 20

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Cluster is part of supercluster: 1

Cluster characteristics:

size	6902
size_real	6902
ecount	2198105
supercluster	1
annotations_summary	0.07% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.03% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT 0.01% organelle/mitochondria
pair_completeness	0.294934333958724
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.315415821501014
satellite_probability	2.40775827807451e-09
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2380
S9	2330
S7	2200

comparative analysis - number of edges between species:

	S8	S9	S7
S8	260000	262000	235000
S9	262000	263000	236000
S7	235000	236000	211000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	1.000	1
S9	1.000	0.999	1
S7	1.000	1.000	1

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00014

Ale Ty1-INT Ale Ty1-INT 5 0.00072

Ivana Ty1-RT Ivana Ty1-RT 2 0.00029

clusters with similarity:

Cluster	Number of similarity hits

9	88000
19	78900
52	5960
41	2220
91	55
101	10
393	8
6	1
18	1
26	1
48	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

9	1640	0.414
19	1050	0.278
41	387	0.136
52	252	0.0861
6	27	0.00613
101	25	0.0126
26	24	0.00662
91	16	0.00796
16	12	0.00309
48	11	0.00403
81	9	0.00373
11	8	0.00213
13	8	0.00193
24	7	0.00229
29	7	0.00224
1	6	0.00131
15	6	0.00204
2	5	0.0013
18	5	0.00175
123	4	0.00208
393	4	0.00212
36	3	0.00119
63	3	0.00123
3950	3	0.00159
12	2	0.000716
22	2	0.000609
23	2	0.000709
28	2	0.000836
6230	2	0.00106
22200	2	0.00106
3	1	0.000204
4	1	0.00023
5	1	0.000221
21	1	0.000395
30	1	4e-04
32	1	0.000295
33	1	0.000438
35	1	0.000356
37	1	0.000402
38	1	0.000365
43	1	0.000392
50	1	0.000475
55	1	0.000467
56	1	0.000396
59	1	0.00038
68	1	0.000474
69	1	0.000482
78	1	0.00048
80	1	0.000475
92	1	0.000507
93	1	0.000482
96	1	0.000527
186	1	0.000528
424	1	0.00053
754	1	0.000531
2650	1	0.000532
4690	1	0.000532
6790	1	0.000532
7120	1	0.000532
9750	1	0.000532
11200	1	0.000532
12000	1	0.000532
13500	1	0.000532
20800	1	0.000532
22700	1	0.000532
24200	1	0.000532

CL20 ----> CL9

No. of shared pairs: :1643

CL20 ----> CL19

No. of shared pairs: :1048

CL20 ----> CL41

No. of shared pairs: :387

CL20 ----> CL52

No. of shared pairs: :252

CL20 ----> CL6

No. of shared pairs: :27

CL20 ----> CL101

No. of shared pairs: :25

CL20 ----> CL26

No. of shared pairs: :24

CL20 ----> CL91

No. of shared pairs: :16

CL20 ----> CL16

No. of shared pairs: :12

CL20 ----> CL48

No. of shared pairs: :11