Cluster no. 49

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Cluster is part of supercluster: 1

Cluster characteristics:

size 2748
size_real 2748
ecount 403699
supercluster 1
annotations_summary 0.18% organelle/plastid
0.04% organelle/mitochondria
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
pair_completeness 0.27104532839963
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.497088791848617
satellite_probability 5.99346515491078e-06
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 912
S9 886
S7 950
comparative analysis - number of edges between species:
S8 S9 S7
S8 42600 41500 47000
S9 41500 40500 45700
S7 47000 45700 52300
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.000 1.000 0.999
S9 1.000 1.000 0.997
S7 0.999 0.997 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.00036
plastid plastid 5 0.00182
Reina Ty3-PROT Reina Ty3-PROT 1 0.00036

clusters with similarity:

Cluster Number of similarity hits
32 3970
31 209
72 189

clusters connected through mates:

Cluster Number of shared
read pairs
k
32 666 0.29
72 155 0.119
31 61 0.0413
11 37 0.0139
756 4 0.00503
93 3 0.00305
2 2 0.000726
23 2 0.00116
732 2 0.00252
1930 2 0.00253
2010 2 0.00253
2220 2 0.00253
2560 2 0.00253
2630 2 0.00253
2750 2 0.00253
3380 2 0.00253
3670 2 0.00253
4630 2 0.00253
5260 2 0.00253
5470 2 0.00253
7210 2 0.00253
7260 2 0.00253
7760 2 0.00253
8840 2 0.00253
9850 2 0.00253
10000 2 0.00253
13300 2 0.00253
13500 2 0.00253
14200 2 0.00253
19100 2 0.00253
19600 2 0.00253
20100 2 0.00253
20800 2 0.00253
21700 2 0.00253
22300 2 0.00253
23200 2 0.00253
24300 2 0.00253
3 1 0.000263
5 1 0.000291
8 1 0.000442
9 1 0.000348
10 1 0.00061
13 1 0.000328
15 1 0.000541
26 1 0.000395
27 1 0.000446
43 1 0.000685
48 1 0.00061
56 1 0.000697
60 1 0.000903
63 1 0.000739
78 1 0.00101
81 1 0.000756
92 1 0.00114
100 1 0.00125
1560 1 0.00127
1940 1 0.00127
2180 1 0.00127
2210 1 0.00127
2440 1 0.00127
2780 1 0.00127
3020 1 0.00127
3150 1 0.00127
3560 1 0.00127
3930 1 0.00127
4390 1 0.00127
4490 1 0.00127
5150 1 0.00127
5580 1 0.00127
5640 1 0.00127
5710 1 0.00127
6240 1 0.00127
6320 1 0.00127
6540 1 0.00127
6900 1 0.00127
7180 1 0.00127
7190 1 0.00127
7220 1 0.00127
7270 1 0.00127
7290 1 0.00127
8060 1 0.00127
8280 1 0.00127
9340 1 0.00127
9580 1 0.00127
9980 1 0.00127
10100 1 0.00127
10600 1 0.00127
10900 1 0.00127
12400 1 0.00127
12800 1 0.00127
13100 1 0.00127
13200 1 0.00127
13400 1 0.00127
13400 1 0.00127
13800 1 0.00127
14200 1 0.00127
14300 1 0.00127
14400 1 0.00127
14600 1 0.00127
15400 1 0.00127
15900 1 0.00127
15900 1 0.00127
15900 1 0.00127
16500 1 0.00127
16900 1 0.00127
17300 1 0.00127
17400 1 0.00127
18200 1 0.00127
18300 1 0.00127
18600 1 0.00127
18700 1 0.00127
19000 1 0.00127
19200 1 0.00127
20900 1 0.00127
20900 1 0.00127
21400 1 0.00127
21600 1 0.00127
21700 1 0.00127
21800 1 0.00127
22200 1 0.00127
22900 1 0.00127
23400 1 0.00127
23500 1 0.00127
24400 1 0.00127
25300 1 0.00127

CL49 ----> CL32

image

No. of shared pairs: :666

CL49 ----> CL72

image

No. of shared pairs: :155

CL49 ----> CL31

image

No. of shared pairs: :61

CL49 ----> CL11

image

No. of shared pairs: :37