Cluster no. 160

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Cluster is part of supercluster: 104

Cluster characteristics:

size 100
size_real 100
ecount 352
supercluster 104
annotations_summary 100.00% organelle/plastid
pair_completeness 0.851851851851852
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.01
satellite_probability 1.78459432152064e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 39
S9 25
S7 36
comparative analysis - number of edges between species:
S8 S9 S7
S8 62.0 33 52.5
S9 33.0 22 31.0
S7 52.5 31 35.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.000 0.916 1.060
S9 0.916 1.050 1.070
S7 1.060 1.070 0.877

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 100 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1640 3 0.4
1670 1 0.154
2520 1 0.154
2760 1 0.154
21400 1 0.2