Cluster no. 67

Cluster no. 67

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Cluster is part of supercluster: 20

Cluster characteristics:

size	1699
size_real	1699
ecount	13574
supercluster	20
annotations_summary	0.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness	0.632084534101825
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0264861683343143
satellite_probability	7.56855036274663e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	589
S9	510
S7	600

comparative analysis - number of edges between species:

	S8	S9	S7
S8	1490	1400	1680
S9	1400	1240	1480
S7	1680	1480	1720

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.97	1.010	1.02
S9	1.01	0.988	1.00
S7	1.02	1.000	0.98

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-INT Athila Ty3-INT 1 0.00059

clusters with similarity:

Cluster	Number of similarity hits

7	111
14	74
17	38
39	37
1	22
28	12
37	7
30	4
54	3
65	3
105	2
29	1
87	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	85	0.0294
17	39	0.0367
14	31	0.0296
28	26	0.037
7	25	0.024
39	18	0.018
54	10	0.0206
65	7	0.0156
929	7	0.0355
1410	7	0.0358
37	6	0.00749
30	5	0.00618
71	5	0.0113
12	3	0.00271
105	3	0.0122
2250	3	0.0155
2270	3	0.0155
6600	3	0.0155
43	2	0.00232
53	2	0.00406
15200	2	0.0104
2	1	0.000464
13	1	0.000408
15	1	0.000798
16	1	0.000455
22	1	0.000626
29	1	0.000693
31	1	0.00114
41	1	0.000864
70	1	0.00204
79	1	0.00262
278	1	0.0048
604	1	0.00509
2130	1	0.00517
2520	1	0.00515
2880	1	0.00519
6440	1	0.00518
7910	1	0.00519
10600	1	0.00519
14400	1	0.00519
15600	1	0.00519
26100	1	0.00519

CL67 ----> CL1

No. of shared pairs: :85

CL67 ----> CL17

No. of shared pairs: :39

CL67 ----> CL14

No. of shared pairs: :31

CL67 ----> CL28

No. of shared pairs: :26

CL67 ----> CL7

No. of shared pairs: :25

CL67 ----> CL39

No. of shared pairs: :18

CL67 ----> CL54

No. of shared pairs: :10