Cluster no. 54

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Cluster is part of supercluster: 2

Cluster characteristics:

size	2512
size_real	2512
ecount	22794
supercluster	2
annotations_summary	0.24% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 0.12% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.04% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase 0.04% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT 0.04% Class_II/Subclass_1/TIR/hAT:hAT-TPase
pair_completeness	0.61960025789813
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00477707006369427
satellite_probability	5.75854876097884e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	798
S9	877
S7	837

comparative analysis - number of edges between species:

	S8	S9	S7
S8	2180	2510	2340
S9	2510	2910	2670
S7	2340	2670	2650

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.01	1.010	0.990
S9	1.01	1.010	0.982
S7	0.99	0.982	1.030

protein domains:

Reads annotation summary

cl_string domain Freq proportion

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.0004

Ale Ty1-INT Ale Ty1-INT 3 0.0012

Bryco Ty1-INT Bryco Ty1-INT 1 0.0004

SIRE Ty1-INT SIRE Ty1-INT 6 0.0024

hAT hAT-TPase hAT hAT-TPase 1 0.0004

clusters with similarity:

Cluster	Number of similarity hits

17	172
1	125
14	80
28	56
37	14
75	4
67	3
105	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	139	0.0464
17	119	0.102
14	77	0.0669
28	62	0.0768
67	10	0.0206
402	10	0.0332
12	6	0.00496
938	5	0.0167
2170	5	0.0168
22	4	0.00235
2320	4	0.0134
37	3	0.00331
71	3	0.00548
2760	3	0.0101
5500	3	0.0101
16	2	0.000869
75	2	0.00362
105	2	0.00571
1330	2	0.00669
7190	2	0.00675
19500	2	0.00676
10	1	0.000873
15	1	0.000737
19	1	0.000459
21	1	0.00106
24	1	0.000678
26	1	0.00049
30	1	0.0011
34	1	0.00173
50	1	0.00192
51	1	0.00178
57	1	0.00319
58	1	0.00257
63	1	0.00116
100	1	0.00326
298	1	0.00326
458	1	0.0033
596	1	0.00336
604	1	0.00333
3640	1	0.00337
6440	1	0.00337
10400	1	0.00338
15600	1	0.00338
23400	1	0.00338

CL54 ----> CL1

No. of shared pairs: :139

CL54 ----> CL17

No. of shared pairs: :119

CL54 ----> CL14

No. of shared pairs: :77

CL54 ----> CL28

No. of shared pairs: :62

CL54 ----> CL67

No. of shared pairs: :10

CL54 ----> CL402

No. of shared pairs: :10