Cluster no. 83

Cluster no. 83

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Cluster is part of supercluster: 1

Cluster characteristics:

size	1070
size_real	1070
ecount	79516
supercluster	1
annotations_summary	0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.261792452830189
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00747663551401869
satellite_probability	1.10184706727251e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	352
S9	375
S7	343

comparative analysis - number of edges between species:

	S8	S9	S7
S8	9310	9150	8820
S9	9150	8900	8570
S7	8820	8570	8220

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.995	1.000	1.000
S9	1.000	0.999	1.000
S7	1.000	1.000	0.996

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Reina Ty3-INT Reina Ty3-INT 1 0.00093

clusters with similarity:

Cluster	Number of similarity hits

31	1330
93	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

31	283	0.282
59	24	0.0226
2590	4	0.0127
1640	3	0.00948
11	2	0.000913
13	2	0.000777
22	2	0.00116
53	2	0.00326
1100	2	0.00634
1670	2	0.00634
3440	2	0.00635
3960	2	0.00635
5500	2	0.00636
6490	2	0.00636
6660	2	0.00636
16000	2	0.00637
20800	2	0.00637
26100	2	0.00637
1	1	0.000332
3	1	0.000301
4	1	0.00036
6	1	0.000353
10	1	0.000859
24	1	0.00067
29	1	0.000639
52	1	0.000734
63	1	0.00114
93	1	0.00197
487	1	0.00313
578	1	0.00312
1040	1	0.00315
1960	1	0.00316
1990	1	0.00317
2560	1	0.00318
3120	1	0.00318
4740	1	0.00318
4780	1	0.00318
4900	1	0.00318
4920	1	0.00319
5000	1	0.00319
5170	1	0.00318
5350	1	0.00319
5540	1	0.00318
5980	1	0.00319
6060	1	0.00318
6110	1	0.00318
6690	1	0.00318
8040	1	0.00318
8600	1	0.00318
8840	1	0.00318
8980	1	0.00318
9520	1	0.00318
9790	1	0.00318
11700	1	0.00318
13300	1	0.00318
13600	1	0.00318
14300	1	0.00318
14800	1	0.00318
15400	1	0.00318
15400	1	0.00318
15400	1	0.00318
15800	1	0.00318
15800	1	0.00318
16500	1	0.00318
19000	1	0.00318
19200	1	0.00318
19600	1	0.00318
23800	1	0.00318
24000	1	0.00318

CL83 ----> CL31

No. of shared pairs: :283

CL83 ----> CL59

No. of shared pairs: :24