Cluster no. 172
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Cluster is part of supercluster: 116
Cluster characteristics:
| size |
86 |
| size_real |
86 |
| ecount |
326 |
| supercluster |
116 |
| annotations_summary |
|
| pair_completeness |
0.409836065573771 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0116279069767442 |
| satellite_probability |
1.06251818752296e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
23 |
| S9 |
26 |
| S7 |
37 |
comparative analysis - number of edges between species:
|
S8 |
S9 |
S7 |
| S8 |
29.0 |
27.5 |
38.5 |
| S9 |
27.5 |
21.0 |
39.0 |
| S7 |
38.5 |
39.0 |
66.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S9 |
S7 |
| S8 |
1.050 |
1.080 |
0.921 |
| S9 |
1.080 |
0.894 |
1.010 |
| S7 |
0.921 |
1.010 |
1.040 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 2120 |
4 |
0.19 |
| 53 |
2 |
0.00627 |
| 1480 |
2 |
0.093 |
| 1930 |
2 |
0.0952 |
| 2010 |
2 |
0.1 |
| 2160 |
2 |
0.0952 |
| 5670 |
2 |
0.103 |
| 5790 |
2 |
0.103 |
| 18500 |
2 |
0.105 |
| 36 |
1 |
0.00151 |
| 263 |
1 |
0.0357 |
| 368 |
1 |
0.0385 |
| 1610 |
1 |
0.0465 |
| 8950 |
1 |
0.0526 |
|