Cluster no. 178

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Cluster is part of supercluster: 122

Cluster characteristics:

size 82
size_real 82
ecount 320
supercluster 122
annotations_summary 95.12% organelle/plastid
pair_completeness 0.708333333333333
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0121951219512195
satellite_probability 1.24154883703084e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 30
S9 17
S7 35
comparative analysis - number of edges between species:
S8 S9 S7
S8 36.0 24.5 51
S9 24.5 10.0 35
S7 51.0 35.0 53
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.927 1.010 1.050
S9 1.010 0.662 1.160
S7 1.050 1.160 0.878

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 78 0.95

clusters connected through mates:

Cluster Number of shared
read pairs		 k
693 5 0.435
664 2 0.167
4200 2 0.222
29 1 0.000794
30 1 0.0016
36 1 0.00154
69 1 0.00496
185 1 0.0667