Cluster no. 53

Cluster no. 53

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Cluster is part of supercluster: 12

Cluster characteristics:

size	2584
size_real	2584
ecount	32559
supercluster	12
annotations_summary	0.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.04% Class_II/Subclass_2/Helitron:Helitron-HEL1 0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness	0.622096672944131
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0011609907120743
satellite_probability	5.75854876097884e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	823
S9	884
S7	877

comparative analysis - number of edges between species:

	S8	S9	S7
S8	3100	3440	3420
S9	3440	3950	3940
S7	3420	3940	3880

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.020	0.992	0.994
S9	0.992	1.000	1.010
S7	0.994	1.010	0.999

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 0.00039

Ale Ty1-INT Ale Ty1-INT 1 0.00039

TatV Ty3-INT TatV Ty3-INT 4 0.00155

Tekay Ty3-INT Tekay Ty3-INT 1 0.00039

clusters with similarity:

Cluster	Number of similarity hits

103	2
97	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

103	27	0.0808
98	19	0.0534
94	15	0.0455
585	9	0.0294
1	7	0.00233
552	7	0.0227
726	6	0.0195
2	4	0.00176
5	4	0.00135
16	4	0.00173
30	4	0.00435
368	4	0.0129
1640	4	0.0132
1770	4	0.0132
2800	4	0.0132
8	3	0.00169
12	3	0.00247
13	3	0.00117
41	3	0.00237
1920	3	0.0099
2510	3	0.00988
2830	3	0.00988
3570	3	0.0099
6980	3	0.00992
3	2	0.000604
7	2	0.00174
15	2	0.00147
21	2	0.0021
22	2	0.00117
25	2	0.00281
67	2	0.00406
83	2	0.00326
172	2	0.00627
1160	2	0.00655
2010	2	0.0066
4070	2	0.0066
8620	2	0.00662
10300	2	0.00662
15000	2	0.00662
15000	2	0.00662
23700	2	0.00662
25400	2	0.00662
25400	2	0.00662
25900	2	0.00662
4	1	0.000362
6	1	0.000354
9	1	0.000419
11	1	0.000459
18	1	0.000782
23	1	0.000804
24	1	0.000675
28	1	0.00123
29	1	0.000644
31	1	0.00101
33	1	0.00142
34	1	0.00172
39	1	0.000901
42	1	0.0016
43	1	0.00103
44	1	0.00161
45	1	0.00175
48	1	0.000868
55	1	0.00177
58	1	0.00253
61	1	0.00125
70	1	0.00167
71	1	0.00181
74	1	0.00157
75	1	0.00179
79	1	0.00204
82	1	0.00266
88	1	0.00275
89	1	0.00266
92	1	0.00254
97	1	0.00268
122	1	0.00317
127	1	0.00289
215	1	0.00313
218	1	0.00311
245	1	0.00312
302	1	0.00318
421	1	0.00323
734	1	0.00329
863	1	0.00328
887	1	0.00329
912	1	0.00327
1050	1	0.00329
1060	1	0.00328
1610	1	0.00328
1920	1	0.0033
2070	1	0.0033
2240	1	0.00331
3390	1	0.0033
3500	1	0.0033
4060	1	0.0033
4160	1	0.0033
4350	1	0.00331
4720	1	0.00331
5720	1	0.00331
6840	1	0.00331
7160	1	0.00332
7250	1	0.00331
7270	1	0.00331
7770	1	0.00331
8440	1	0.00331
9060	1	0.00331
12000	1	0.00331
12300	1	0.00331
14900	1	0.00331
16500	1	0.00331
16900	1	0.00331
18100	1	0.00331
18100	1	0.00331
18700	1	0.00331
18900	1	0.00331
20000	1	0.00331
20300	1	0.00331
20500	1	0.00331
21100	1	0.00331
23800	1	0.00331
25100	1	0.00331

CL53 ----> CL103

No. of shared pairs: :27

CL53 ----> CL98

No. of shared pairs: :19

CL53 ----> CL94

No. of shared pairs: :15