Cluster no. 143

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Cluster is part of supercluster: 88

Cluster characteristics:

size 129
size_real 129
ecount 4045
supercluster 88
annotations_summary
pair_completeness 0.869565217391304
pbs_score 0.0
TR_score 0.5738309577394349
TR_monomer_length 74.0
loop_index 0.930232558139535
satellite_probability 0.578688792164344
consensus 
ACATTTAATTGTCATTTATTTAGGAATAATGTGTGTCACATTTAATTGTCATTTATTTAGGAATAATGTGTGTC

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
    49
  

  

    S9
    36
  

  

    S7
    44
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S9
    S7
  

   

    S8
    631
    401
    563
  

  

    S9
    401
    260
    368
  

  

    S7
    563
    368
    491
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S9
    S7
  

   

    S8
    1.000
    0.989
    1.000
  

  

    S9
    0.989
    0.994
    1.020
  

  

    S7
    1.000
    1.020
    0.983
  

 


 
 protein domains:



No protein domains detected



protein domains:


  





 
 Reads annotation summary



No similarity hits to repeat databases found


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    1
    1
    0.00037
  

  

    4
    1
    0.000406
  

  

    13
    1
    0.000441
  

  

    28
    1
    0.00194
  

  

    29
    1
    0.000796