Cluster no. 179

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Cluster is part of supercluster: 123

Cluster characteristics:

size 81
size_real 81
ecount 426
supercluster 123
annotations_summary 1.23% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.35
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.185185185185185
satellite_probability 1.41555817860847e-12
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 27
S9 37
S7 17
comparative analysis - number of edges between species:
S8 S9 S7
S8 45 68 24
S9 68 112 38
S7 24 38 9
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.02 0.97 1.050
S9 0.97 1.00 1.050
S7 1.05 1.05 0.761

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-INT Tekay Ty3-INT 1 0.012

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1 2 0.000736
1300 2 0.0889
2 1 0.000504
17 1 0.00112
66 1 0.00351
76 1 0.00404
2820 1 0.0455
4210 1 0.0476
21100 1 0.0488