Cluster no. 145

Go back to cluster table

Cluster is part of supercluster: 30

Cluster characteristics:

size 125
size_real 125
ecount 638
supercluster 30
annotations_summary 0.80% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
pair_completeness 0.225490196078431
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.008
satellite_probability 1.02273405921547e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 49
S9 43
S7 33
comparative analysis - number of edges between species:
S8 S9 S7
S8 94.0 92.5 70
S9 92.5 78.0 56
S7 70.0 56.0 29
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.912 1.02 1.12
S9 1.020 0.97 1.02
S7 1.120 1.02 0.77

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-INT Ivana Ty1-INT 1 0.008

clusters connected through mates:

Cluster Number of shared
read pairs		 k
82 29 0.254
3410 4 0.0964
2710 2 0.0488
5870 1 0.025
7520 1 0.0247
11000 1 0.0247
14400 1 0.0247
15000 1 0.0247
18100 1 0.0247
21600 1 0.0247
22900 1 0.0247

CL145 ----> CL82

image

No. of shared pairs: :29