Cluster no. 116

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Cluster is part of supercluster: 61

Cluster characteristics:

size 240
size_real 240
ecount 1006
supercluster 61
annotations_summary 8.75% Class_I/LTR/Ty1_copia/Bianca:Ty1-RH
0.42% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
pair_completeness 0.63265306122449
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00416666666666667
satellite_probability 4.97759293480724e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 80
S9 80
S7 80
comparative analysis - number of edges between species:
S8 S9 S7
S8 104 115 108
S9 115 109 120
S7 108 120 107
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.981 1.030 0.989
S9 1.030 0.924 1.050
S7 0.989 1.050 0.959

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Bianca Ty1-RH Bianca Ty1-RH 21 0.0875
Angela Ty1-RT Angela Ty1-RT 1 0.0042

clusters connected through mates:

Cluster Number of shared
read pairs		 k
151 9 0.202
329 8 0.186
2780 2 0.0678
19200 2 0.0714
29 1 0.000782
61 1 0.0019
744 1 0.0303
1410 1 0.0345
1980 1 0.0345
6350 1 0.0351
15300 1 0.0357