Cluster no. 13

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Cluster is part of supercluster: 1

Cluster characteristics:

size 8126
size_real 8126
ecount 1672892
supercluster 1
annotations_summary 0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
pair_completeness 0.284743083003953
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0158749692345557
satellite_probability 3.38878449149402e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2700
S9 2660
S7 2760
comparative analysis - number of edges between species:
S8 S9 S7
S8 190000 183000 192000
S9 183000 175000 183000
S7 192000 183000 191000
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.998 1 1.000
S9 1.000 1 1.000
S7 1.000 1 0.998

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-INT Angela Ty1-INT 1 0.00012
Tork Ty1-RT Tork Ty1-RT 1 0.00012
Tcn1 Ty3-CHDII Tcn1 Ty3-CHDII 1 0.00012
Phygy Ty3-INT Phygy Ty3-INT 1 0.00012
Tekay Ty3-INT Tekay Ty3-INT 3 0.00037
Reina Ty3-RH Reina Ty3-RH 1 0.00012
TatV Ty3-RH TatV Ty3-RH 1 0.00012
Tekay Ty3-RH Tekay Ty3-RH 1 0.00012
Reina Ty3-RT Reina Ty3-RT 2 0.00025
Tekay Ty3-RT Tekay Ty3-RT 2 0.00025
hAT hAT-TPase hAT hAT-TPase 2 0.00025

clusters with similarity:

Cluster Number of similarity hits
4 92600
27 17300
63 4930
68 2090
25 331
24 54
38 31
126 6
61 2
434 2
3 1
8 1
16 1
17 1
26 1
32 1
42 1
933 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4 1860 0.394
27 752 0.202
63 126 0.0446
68 98 0.0393
24 89 0.0259
59 67 0.0222
25 46 0.0172
48 34 0.0109
2 29 0.00686
16 26 0.00609
3 23 0.00436
1 20 0.00403
5 19 0.00387
8 18 0.00482
6 17 0.00355
114 17 0.00732
18 14 0.00432
29 13 0.0037
9 11 0.00253
22 11 0.003
41 11 0.00341
19 10 0.00241
11 9 0.00217
32 9 0.00239
20 8 0.00193
28 8 0.00288
10 7 0.00225
12 7 0.0022
17 7 0.00223
23 7 0.00218
26 7 0.00175
38 7 0.00224
40 7 0.0025
44 7 0.00271
78 7 0.00284
136 7 0.00308
21 6 0.00206
35 6 0.00188
15 5 0.0015
86 5 0.00203
7 4 0.00128
31 4 0.00136
42 4 0.00155
61 4 0.00145
91 4 0.00167
14 3 0.000962
30 3 0.00104
37 3 0.00104
45 3 0.00118
53 3 0.00117
62 3 0.00118
74 3 0.00115
76 3 0.0012
97 3 0.00129
104 3 0.00126
126 3 0.0013
323 3 0.00132
933 3 0.00132
33 2 0.00075
36 2 0.000689
43 2 0.000682
46 2 0.000753
50 2 0.000804
56 2 0.000688
58 2 0.000849
64 2 0.000772
66 2 0.000791
71 2 0.000795
79 2 0.000816
83 2 0.000777
94 2 0.000873
123 2 0.000868
183 2 0.000874
4100 2 0.000883
4230 2 0.000884
4300 2 0.000884
4360 2 0.000884
15700 2 0.000884
22100 2 0.000884
34 1 0.000393
39 1 0.000326
49 1 0.000328
51 1 0.000395
52 1 0.000302
65 1 0.000397
67 1 0.000408
69 1 0.000407
72 1 0.00036
73 1 0.000393
75 1 0.000397
77 1 0.000427
80 1 0.000402
82 1 0.000428
84 1 0.000401
88 1 0.00043
89 1 0.000428
93 1 0.000407
95 1 0.000428
98 1 0.000432
99 1 0.000435
102 1 0.000428
111 1 0.000431
119 1 0.000437
120 1 0.000441
121 1 0.000436
128 1 0.000434
143 1 0.000441
144 1 0.000437
154 1 0.000434
159 1 0.000435
175 1 0.000437
191 1 0.000439
199 1 0.000438
203 1 0.000438
207 1 0.000439
209 1 0.000439
225 1 0.000438
232 1 0.000438
254 1 0.00044
256 1 0.00044
317 1 0.00044
322 1 0.000439
330 1 0.00044
354 1 0.000441
359 1 0.00044
369 1 0.00044
381 1 0.000441
387 1 0.00044
431 1 0.00044
433 1 0.00044
434 1 0.00044
436 1 0.000441
445 1 0.000441
455 1 0.00044
468 1 0.00044
497 1 0.00044
559 1 0.000441
579 1 0.000441
624 1 0.000442
662 1 0.000441
684 1 0.000441
1070 1 0.000442
1090 1 0.000441
1300 1 0.000442
1330 1 0.000442
1390 1 0.000442
1460 1 0.000441
1540 1 0.000442
1570 1 0.000442
1750 1 0.000442
2130 1 0.000442
2180 1 0.000442
2480 1 0.000442
2510 1 0.000442
2620 1 0.000442
2660 1 0.000442
2680 1 0.000442
2880 1 0.000442
2940 1 0.000442
3020 1 0.000442
3140 1 0.000442
3190 1 0.000442
3340 1 0.000442
3390 1 0.000442
3540 1 0.000442
3630 1 0.000442
3780 1 0.000442
3890 1 0.000442
3900 1 0.000442
3940 1 0.000442
4130 1 0.000442
4420 1 0.000442
4480 1 0.000442
5180 1 0.000442
5260 1 0.000442
5390 1 0.000442
5470 1 0.000442
5640 1 0.000442
5700 1 0.000442
6010 1 0.000442
6410 1 0.000442
6800 1 0.000442
7020 1 0.000442
8630 1 0.000442
8710 1 0.000442
9210 1 0.000442
9300 1 0.000442
9390 1 0.000442
9470 1 0.000442
10100 1 0.000442
10100 1 0.000442
10200 1 0.000442
10700 1 0.000442
11500 1 0.000442
11600 1 0.000442
12400 1 0.000442
12800 1 0.000442
12900 1 0.000442
14200 1 0.000442
14200 1 0.000442
14600 1 0.000442
14700 1 0.000442
14700 1 0.000442
15100 1 0.000442
15200 1 0.000442
16500 1 0.000442
16600 1 0.000442
16700 1 0.000442
17200 1 0.000442
18900 1 0.000442
19000 1 0.000442
19100 1 0.000442
19400 1 0.000442
20400 1 0.000442
21100 1 0.000442
21200 1 0.000442
21900 1 0.000442
22100 1 0.000442
22200 1 0.000442
22200 1 0.000442
22400 1 0.000442
23000 1 0.000442
26000 1 0.000442

CL13 ----> CL4

image

No. of shared pairs: :1861

CL13 ----> CL27

image

No. of shared pairs: :752

CL13 ----> CL63

image

No. of shared pairs: :126

CL13 ----> CL68

image

No. of shared pairs: :98

CL13 ----> CL24

image

No. of shared pairs: :89

CL13 ----> CL59

image

No. of shared pairs: :67

CL13 ----> CL25

image

No. of shared pairs: :46

CL13 ----> CL48

image

No. of shared pairs: :34

CL13 ----> CL2

image

No. of shared pairs: :29

CL13 ----> CL16

image

No. of shared pairs: :26

CL13 ----> CL3

image

No. of shared pairs: :23

CL13 ----> CL1

image

No. of shared pairs: :20

CL13 ----> CL5

image

No. of shared pairs: :19

CL13 ----> CL8

image

No. of shared pairs: :18

CL13 ----> CL6

image

No. of shared pairs: :17

CL13 ----> CL114

image

No. of shared pairs: :17

CL13 ----> CL18

image

No. of shared pairs: :14

CL13 ----> CL29

image

No. of shared pairs: :13

CL13 ----> CL9

image

No. of shared pairs: :11

CL13 ----> CL22

image

No. of shared pairs: :11

CL13 ----> CL41

image

No. of shared pairs: :11

CL13 ----> CL19

image

No. of shared pairs: :10