Cluster no. 104

Go back to cluster table

Cluster is part of supercluster: 25

Cluster characteristics:

size 397
size_real 397
ecount 2279
supercluster 25
annotations_summary 0.50% organelle/plastid
pair_completeness 0.272435897435897
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00251889168765743
satellite_probability 1.3492571833667e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 142
S9 131
S7 124
comparative analysis - number of edges between species:
S8 S9 S7
S8 356 268 274
S9 268 210 214
S7 274 214 200
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.010 0.983 1.010
S9 0.983 0.997 1.030
S7 1.010 1.030 0.963

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2 0.005

clusters connected through mates:

Cluster Number of shared
read pairs		 k
86 47 0.152
16 4 0.00189
13 3 0.00126
15 2 0.0017
61 2 0.00327
579 2 0.0168
1490 2 0.0171
1840 2 0.0172
2800 2 0.0172
3610 2 0.0173
23000 2 0.0175
24 1 0.000773
69 1 0.00325
107 1 0.00517
2730 1 0.00862
3690 1 0.00873
7110 1 0.0087
9520 1 0.00873
11600 1 0.00873
11900 1 0.00873
13400 1 0.00873
13800 1 0.00873
16100 1 0.00873
18900 1 0.00873
19000 1 0.00873
19800 1 0.00873
20400 1 0.00873
23700 1 0.00873
24200 1 0.00873
25500 1 0.00873

CL104 ----> CL86

image

No. of shared pairs: :47