Cluster no. 52

Cluster no. 52

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Cluster is part of supercluster: 1

Cluster characteristics:

size	2599
size_real	2599
ecount	396708
supercluster	1
annotations_summary	0.23% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
pair_completeness	0.106428267347808
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.431319738360908
satellite_probability	5.07597734023815e-08
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	861
S9	884
S7	854

comparative analysis - number of edges between species:

	S8	S9	S7
S8	41600	45900	40900
S9	45900	50400	45400
S7	40900	45400	40300

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	1.000	0.998
S9	1.000	0.996	1.000
S7	0.998	1.000	0.997

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-CHDII CRM Ty3-CHDII 6 0.0023

clusters with similarity:

Cluster	Number of similarity hits

6	64200
19	43200
20	5960
43	3310
11	3150
26	1200
8	480
41	426
3	345
35	3
91	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

19	619	0.211
6	547	0.153
20	252	0.0861
11	132	0.0451
43	105	0.061
26	91	0.0326
41	74	0.0367
5	53	0.0143
3	45	0.0111
56	24	0.0142
9	19	0.00606
8	12	0.00476
16	11	0.0036
35	6	0.00303
24	4	0.00179
12	3	0.00153
32	3	0.00117
1	2	0.000534
2	2	0.000663
74	2	0.00144
81	2	0.00126
13	1	0.000302
15	1	0.000474
18	1	0.000493
25	1	0.000685
33	1	0.000687
40	1	0.000628
48	1	0.000526
60	1	0.00073
63	1	0.00062
72	1	0.00064
83	1	0.000734
91	1	0.000848
130	1	0.000922
458	1	0.000946
1670	1	0.00095
3060	1	0.000951
3240	1	0.000951
4250	1	0.000951
5710	1	0.000952
6020	1	0.000951
8570	1	0.000952

CL52 ----> CL19

No. of shared pairs: :619

CL52 ----> CL6

No. of shared pairs: :547

CL52 ----> CL20

No. of shared pairs: :252

CL52 ----> CL11

No. of shared pairs: :132

CL52 ----> CL43

No. of shared pairs: :105

CL52 ----> CL26

No. of shared pairs: :91

CL52 ----> CL41

No. of shared pairs: :74

CL52 ----> CL5

No. of shared pairs: :53

CL52 ----> CL3

No. of shared pairs: :45

CL52 ----> CL56

No. of shared pairs: :24

CL52 ----> CL9

No. of shared pairs: :19

CL52 ----> CL8

No. of shared pairs: :12

CL52 ----> CL16

No. of shared pairs: :11