Cluster no. 88

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Cluster is part of supercluster: 34

Cluster characteristics:

size	920
size_real	920
ecount	4553
supercluster	34
annotations_summary	19.13% Class_I/LTR/Ty1_copia/TAR:Ty1-RT 12.17% Class_I/LTR/Ty1_copia/TAR:Ty1-INT 11.41% Class_I/LTR/Ty1_copia/TAR:Ty1-RH 3.48% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT 2.83% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG 0.11% organelle/mitochondria 0.11% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness	0.762452107279693
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00108695652173913
satellite_probability	5.68788576307886e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	316
S9	300
S7	304

comparative analysis - number of edges between species:

	S8	S9	S7
S8	613	556	510
S9	556	464	458
S7	510	458	428

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.991	1.020	0.991
S9	1.020	0.967	1.010
S7	0.991	1.010	0.999

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.0011

TAR Ty1-GAG TAR Ty1-GAG 26 0.0283

TAR Ty1-INT TAR Ty1-INT 112 0.1217

TAR Ty1-PROT TAR Ty1-PROT 32 0.0348

TAR Ty1-RH TAR Ty1-RH 105 0.1141

Ikeros Ty1-RT Ikeros Ty1-RT 1 0.0011

TAR Ty1-RT TAR Ty1-RT 176 0.1913

clusters connected through mates:

Cluster	Number of shared read pairs	k

894	5	0.0775
987	3	0.0455
2	2	0.000986
1690	2	0.0315
2530	2	0.031
3170	2	0.0312
5630	2	0.0315
7040	2	0.0315
8560	2	0.0317
19300	2	0.0317
20800	2	0.0317
22900	2	0.0317
23200	2	0.0317
25100	2	0.0317
1	1	0.000362
13	1	0.00043
16	1	0.000483
18	1	0.000962
23	1	0.000995
29	1	0.000761
36	1	0.00142
53	1	0.00275
69	1	0.0039
70	1	0.00277
516	1	0.0139
2270	1	0.0155
2350	1	0.0157
2490	1	0.0157
2890	1	0.0159
4360	1	0.0157
4550	1	0.0157
5070	1	0.0157
7240	1	0.0157
8210	1	0.0159
9420	1	0.0159
17000	1	0.0159
21800	1	0.0159
25700	1	0.0159