Cluster no. 125

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Cluster is part of supercluster: 70

Cluster characteristics:

size 189
size_real 189
ecount 1094
supercluster 70
annotations_summary 99.47% organelle/plastid
0.53% organelle/mitochondria
pair_completeness 0.83495145631068
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00529100529100529
satellite_probability 2.43210965403456e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 52
S9 60
S7 77
comparative analysis - number of edges between species:
S8 S9 S7
S8 93 109 116
S9 109 129 126
S7 116 126 169
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.000 1.03 0.972
S9 1.030 1.07 0.920
S7 0.972 0.92 1.090

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.0053
plastid plastid 188 0.9947

clusters connected through mates:

Cluster Number of shared
read pairs
k
117 5 0.294
124 4 0.211
15000 2 0.211
297 1 0.087