Cluster no. 65

Cluster no. 65

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Cluster is part of supercluster: 2

Cluster characteristics:

size	1885
size_real	1885
ecount	21113
supercluster	2
annotations_summary
pair_completeness	0.572143452877398
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0244031830238727
satellite_probability	6.94149363703657e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	649
S9	613
S7	623

comparative analysis - number of edges between species:

	S8	S9	S7
S8	2410	2290	2380
S9	2290	2310	2320
S7	2380	2320	2420

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.020	0.987	0.997
S9	0.987	1.020	0.996
S7	0.997	0.996	1.010

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

14	391
1	162
51	15
87	12
67	3
30	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

14	254	0.228
1	149	0.0504
51	7	0.0134
67	7	0.0156
12	4	0.00342
87	4	0.0102
3540	4	0.0155
3710	4	0.0155
22	2	0.0012
23	2	0.00167
25	2	0.003
30	2	0.00229
6320	2	0.00775
22400	2	0.00777
24700	2	0.00777
6	1	0.00036
13	1	0.000397
16	1	0.000442
19	1	0.000467
36	1	0.00111
47	1	0.00223
50	1	0.00207
199	1	0.0036
200	1	0.00358
7860	1	0.00388
9280	1	0.00388
18100	1	0.00388
20500	1	0.00388
22600	1	0.00388

CL65 ----> CL14

No. of shared pairs: :254

CL65 ----> CL1

No. of shared pairs: :149