Cluster no. 28

Cluster no. 28

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Cluster is part of supercluster: 9

Cluster characteristics:

size	6252
size_real	6252
ecount	177935
supercluster	9
annotations_summary	0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
pair_completeness	0.718526663001649
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00511836212412028
satellite_probability	1.10115207681596e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2100
S9	2110
S7	2050

comparative analysis - number of edges between species:

	S8	S9	S7
S8	21800	20400	20100
S9	20400	19000	18800
S7	20100	18800	18400

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.998	1.000	1.000
S9	1.000	0.996	1.000
S7	1.000	1.000	0.996

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tork Ty1-PROT Tork Ty1-PROT 2 0.00032

clusters with similarity:

Cluster	Number of similarity hits

22	624
1	132
51	88
14	58
54	56
17	41
7	39
37	35
89	18
67	12
15	10
71	10
23	7
30	6
62	5
12	4
39	4
105	2
21	1
75	1
87	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

22	181	0.0943
1	178	0.0554
54	62	0.0768
37	40	0.0357
51	35	0.045
67	26	0.037
71	23	0.0301
12	20	0.014
39	19	0.0144
7	17	0.0125
14	17	0.0124
15	14	0.0089
17	13	0.0094
30	12	0.0106
13	8	0.00288
80	8	0.0108
1010	8	0.0155
23	6	0.00412
594	5	0.00963
92	4	0.00662
898	4	0.00774
4180	4	0.00778
18	3	0.00201
75	3	0.0039
1850	3	0.00583
2180	3	0.00583
2	2	0.000807
8	2	0.00101
16	2	0.000794
19	2	0.000834
20	2	0.000836
24	2	0.00118
50	2	0.00271
58	2	0.0033
102	2	0.0034
481	2	0.00386
604	2	0.00387
848	2	0.00387
1330	2	0.00388
3310	2	0.00389
6310	2	0.00389
8350	2	0.0039
10700	2	0.0039
13700	2	0.0039
26000	2	0.0039
4	1	0.000336
5	1	0.000316
6	1	0.00033
9	1	0.000385
10	1	0.000734
27	1	0.000509
29	1	0.000567
36	1	0.000866
41	1	0.000677
43	1	0.000845
44	1	0.0012
53	1	0.00123
59	1	0.000792
60	1	0.0012
61	1	0.00099
62	1	0.00127
63	1	0.000929
70	1	0.00123
87	1	0.00154
89	1	0.0017
97	1	0.00171
105	1	0.00176
126	1	0.00181
143	1	0.00194
154	1	0.00181
159	1	0.00183
236	1	0.0019
399	1	0.00193
834	1	0.00193
957	1	0.00194
1140	1	0.00194
1380	1	0.00194
1950	1	0.00195
2070	1	0.00194
2290	1	0.00194
2300	1	0.00195
2720	1	0.00194
3420	1	0.00195
4060	1	0.00195
4920	1	0.00195
5160	1	0.00195
5400	1	0.00195
6800	1	0.00195
6860	1	0.00195
7010	1	0.00195
9310	1	0.00195
12300	1	0.00195
12700	1	0.00195
15000	1	0.00195
15400	1	0.00195
15700	1	0.00195
16900	1	0.00195
17200	1	0.00195
17700	1	0.00195
19100	1	0.00195
21300	1	0.00195
22400	1	0.00195
22900	1	0.00195
23900	1	0.00195
24400	1	0.00195
25300	1	0.00195
25500	1	0.00195

CL28 ----> CL22

No. of shared pairs: :181

CL28 ----> CL1

No. of shared pairs: :178

CL28 ----> CL54

No. of shared pairs: :62

CL28 ----> CL37

No. of shared pairs: :40

CL28 ----> CL51

No. of shared pairs: :35

CL28 ----> CL67

No. of shared pairs: :26

CL28 ----> CL71

No. of shared pairs: :23

CL28 ----> CL12

No. of shared pairs: :20

CL28 ----> CL39

No. of shared pairs: :19

CL28 ----> CL7

No. of shared pairs: :17

CL28 ----> CL14

No. of shared pairs: :17

CL28 ----> CL15

No. of shared pairs: :14

CL28 ----> CL17

No. of shared pairs: :13

CL28 ----> CL30

No. of shared pairs: :12