Cluster no. 155

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Cluster is part of supercluster: 99

Cluster characteristics:

size 105
size_real 105
ecount 463
supercluster 99
annotations_summary 25.71% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.640625
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00952380952380952
satellite_probability 2.63699184809533e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 33
S9 39
S7 33
comparative analysis - number of edges between species:
S8 S9 S7
S8 48.0 59.5 43.5
S9 59.5 78.0 49.5
S7 43.5 49.5 32.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.975 0.976 1.070
S9 0.976 1.030 0.980
S7 1.070 0.980 0.948

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 27 0.26

clusters connected through mates:

Cluster Number of shared
read pairs		 k
309 7 0.298
508 4 0.216
122 1 0.0392