Cluster no. 72

Cluster no. 72

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Cluster is part of supercluster: 1

Cluster characteristics:

size	1526
size_real	1526
ecount	14128
supercluster	1
annotations_summary	0.20% organelle/plastid 0.07% organelle/mitochondria 0.07% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
pair_completeness	0.194988253719655
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.104193971166448
satellite_probability	7.63345687612942e-16
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	511
S9	515
S7	500

comparative analysis - number of edges between species:

	S8	S9	S7
S8	1510	1690	1420
S9	1690	1880	1580
S7	1420	1580	1380

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	1.01	0.993
S9	1.010	1.00	0.990
S7	0.993	0.99	1.020

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 1 0.00066

plastid plastid 3 0.00197

Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 1 0.00066

clusters with similarity:

Cluster	Number of similarity hits

32	220
49	189
93	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

32	249	0.123
49	155	0.119
11	26	0.0109
93	12	0.0169
351	6	0.0114
31	4	0.00332
756	3	0.00576
2780	3	0.00581
4	2	0.000672
26	2	0.000885
1070	2	0.00387
4410	2	0.00388
7430	2	0.00388
8680	2	0.00388
9100	2	0.00388
13500	2	0.00388
16700	2	0.00388
17000	2	0.00388
18400	2	0.00388
24300	2	0.00388
24500	2	0.00388
2	1	0.000403
5	1	0.000316
12	1	7e-04
13	1	0.00036
16	1	0.000397
24	1	0.00059
36	1	0.000865
48	1	0.000732
52	1	0.00064
315	1	0.00191
1270	1	0.00194
1500	1	0.00194
1560	1	0.00194
2010	1	0.00194
2210	1	0.00194
3000	1	0.00194
3270	1	0.00194
3560	1	0.00194
4510	1	0.00194
5080	1	0.00194
5270	1	0.00194
5580	1	0.00194
5630	1	0.00194
5640	1	0.00194
5940	1	0.00194
6030	1	0.00194
6190	1	0.00194
6320	1	0.00194
6560	1	0.00194
6670	1	0.00194
7230	1	0.00194
7270	1	0.00194
7290	1	0.00194
7650	1	0.00194
8120	1	0.00194
8990	1	0.00194
9030	1	0.00194
9280	1	0.00194
9590	1	0.00194
10000	1	0.00194
10100	1	0.00194
10900	1	0.00194
11200	1	0.00194
12000	1	0.00194
12100	1	0.00194
12700	1	0.00194
13200	1	0.00194
13600	1	0.00194
13600	1	0.00194
14200	1	0.00194
14300	1	0.00194
14800	1	0.00194
15400	1	0.00194
15400	1	0.00194
15900	1	0.00194
16900	1	0.00194
17300	1	0.00194
18500	1	0.00194
19100	1	0.00194
19300	1	0.00194
19800	1	0.00194
20400	1	0.00194
20400	1	0.00194
22000	1	0.00194
22300	1	0.00194
22700	1	0.00194
22800	1	0.00194
23600	1	0.00194
23900	1	0.00194
24200	1	0.00194
24400	1	0.00194
24900	1	0.00194
25300	1	0.00194
25800	1	0.00194

CL72 ----> CL32

No. of shared pairs: :249

CL72 ----> CL49

No. of shared pairs: :155

CL72 ----> CL11

No. of shared pairs: :26

CL72 ----> CL93

No. of shared pairs: :12