Cluster no. 74

Go back to cluster table

Cluster is part of supercluster: 24

Cluster characteristics:

size 1468
size_real 1468
ecount 6819
supercluster 24
annotations_summary 0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
pair_completeness 0.370681605975724
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0183923705722071
satellite_probability 2.68770860413085e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 514
S9 446
S7 508
comparative analysis - number of edges between species:
S8 S9 S7
S8 911 729 786
S9 729 722 678
S7 786 678 799
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.060 0.962 0.976
S9 0.962 1.090 0.959
S7 0.976 0.959 1.060

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-RT Athila Ty3-RT 1 0.00068

clusters with similarity:

Cluster Number of similarity hits
35 17
8 7
2 1
22 1
84 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
2 59 0.0256
8 30 0.0166
35 24 0.0189
274 11 0.0317
84 9 0.0158
483 6 0.0175
13 3 0.00115
16 3 0.00128
6170 3 0.00886
12 2 0.0016
22 2 0.00115
52 2 0.00144
1060 2 0.00588
2580 2 0.00589
2590 2 0.00591
3040 2 0.0059
5450 2 0.00591
6470 2 0.00591
7900 2 0.00592
8130 2 0.00592
10100 2 0.00592
10200 2 0.00592
14100 2 0.00592
14400 2 0.00592
16400 2 0.00592
19700 2 0.00592
22200 2 0.00592
22900 2 0.00592
1 1 0.000329
3 1 0.000299
18 1 0.000761
23 1 0.000781
24 1 0.000659
29 1 0.000629
50 1 0.00177
53 1 0.00157
55 1 0.00167
57 1 0.00282
86 1 0.00188
128 1 0.00264
415 1 0.00288
518 1 0.00292
970 1 0.00292
1320 1 0.00295
1460 1 0.00294
1700 1 0.00295
1900 1 0.00294
1980 1 0.00295
2220 1 0.00295
2310 1 0.00295
3210 1 0.00295
3340 1 0.00296
3970 1 0.00296
4260 1 0.00295
4370 1 0.00295
4440 1 0.00296
4750 1 0.00295
5070 1 0.00295
5240 1 0.00295
5250 1 0.00296
5960 1 0.00296
6000 1 0.00296
6100 1 0.00295
6540 1 0.00295
6970 1 0.00295
7020 1 0.00295
7080 1 0.00295
7410 1 0.00296
7450 1 0.00296
8010 1 0.00296
8640 1 0.00296
8990 1 0.00296
8990 1 0.00296
11400 1 0.00296
11800 1 0.00296
12400 1 0.00296
12700 1 0.00296
13100 1 0.00296
13100 1 0.00296
13400 1 0.00296
13600 1 0.00296
13600 1 0.00296
13700 1 0.00296
14900 1 0.00296
14900 1 0.00296
15500 1 0.00296
15500 1 0.00296
15600 1 0.00296
16000 1 0.00296
16700 1 0.00296
16800 1 0.00296
17500 1 0.00296
18000 1 0.00296
18600 1 0.00296
19000 1 0.00296
19700 1 0.00296
19900 1 0.00296
20600 1 0.00296
22200 1 0.00296
22600 1 0.00296
23500 1 0.00296
24100 1 0.00296
24700 1 0.00296
24800 1 0.00296
25100 1 0.00296
25500 1 0.00296
25700 1 0.00296
25700 1 0.00296
25900 1 0.00296

CL74 ----> CL2

image

No. of shared pairs: :59

CL74 ----> CL8

image

No. of shared pairs: :30

CL74 ----> CL35

image

No. of shared pairs: :24

CL74 ----> CL274

image

No. of shared pairs: :11