Cluster no. 38

Cluster no. 38

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Cluster is part of supercluster: 3

Cluster characteristics:

size	5144
size_real	5144
ecount	156265
supercluster	3
annotations_summary	0.17% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-RH 0.02% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness	0.499708454810496
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0225505443234837
satellite_probability	1.27641181786954e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1790
S9	1660
S7	1700

comparative analysis - number of edges between species:

	S8	S9	S7
S8	19300	17800	17600
S9	17800	17100	16500
S7	17600	16500	16100

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.010	0.988	1.000
S9	0.988	1.010	0.999
S7	1.000	0.999	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 9 0.00175

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.00019

SIRE Ty1-INT SIRE Ty1-INT 1 0.00019

Tork Ty1-RH Tork Ty1-RH 1 0.00019

Ale Ty1-RT Ale Ty1-RT 1 0.00019

TatV Ty3-INT TatV Ty3-INT 1 0.00019

Athila Ty3-RT Athila Ty3-RT 1 0.00019

clusters with similarity:

Cluster	Number of similarity hits

35	655
27	590
13	31
8	13
37	7
40	7
18	5

clusters connected through mates:

Cluster	Number of shared read pairs	k

35	555	0.31
8	59	0.0253
27	14	0.00606
16	9	0.00314
37	9	0.00613
1	8	0.00225
13	7	0.00224
2	6	0.00213
24	5	0.00245
441	5	0.00576
18	4	0.00218
142	4	0.00447
3790	4	0.00465
40	3	0.00214
778	3	0.00347
1800	3	0.00348
4770	3	0.00349
4	2	0.000603
9	2	0.000679
23	2	0.00111
29	2	0.000948
61	2	0.00147
147	2	0.00222
3420	2	0.00233
3670	2	0.00233
5960	2	0.00233
7060	2	0.00233
8270	2	0.00233
8750	2	0.00233
8980	2	0.00233
9760	2	0.00233
13500	2	0.00233
13900	2	0.00233
14100	2	0.00233
18600	2	0.00233
20400	2	0.00233
22700	2	0.00233
23500	2	0.00233
23600	2	0.00233
23900	2	0.00233
24800	2	0.00233
25100	2	0.00233
6	1	0.000296
10	1	0.000585
12	1	0.000564
14	1	0.000583
17	1	0.000579
20	1	0.000365
21	1	0.000662
22	1	0.000442
25	1	0.000789
41	1	0.000548
42	1	0.000846
48	1	0.000585
57	1	0.00114
63	1	0.000703
80	1	0.000922
87	1	0.00101
108	1	0.00114
276	1	0.00115
381	1	0.00116
736	1	0.00116
904	1	0.00116
1010	1	0.00116
1490	1	0.00116
1830	1	0.00116
2430	1	0.00116
2740	1	0.00116
3050	1	0.00116
3400	1	0.00116
3600	1	0.00116
3820	1	0.00116
3840	1	0.00116
4090	1	0.00116
4210	1	0.00116
4240	1	0.00116
4300	1	0.00116
4370	1	0.00116
4740	1	0.00116
5040	1	0.00116
5130	1	0.00116
6610	1	0.00116
6630	1	0.00116
6800	1	0.00116
7270	1	0.00116
7680	1	0.00116
7760	1	0.00116
8320	1	0.00116
8430	1	0.00116
8550	1	0.00116
9210	1	0.00116
9720	1	0.00116
10100	1	0.00116
10600	1	0.00116
11600	1	0.00116
12200	1	0.00116
12500	1	0.00116
13000	1	0.00116
13000	1	0.00116
13000	1	0.00116
13500	1	0.00116
14000	1	0.00116
14100	1	0.00116
14100	1	0.00116
14800	1	0.00116
15300	1	0.00116
15800	1	0.00116
16400	1	0.00116
16900	1	0.00116
17000	1	0.00116
17800	1	0.00116
17800	1	0.00116
18100	1	0.00116
18100	1	0.00116
18700	1	0.00116
19500	1	0.00116
19500	1	0.00116
22000	1	0.00116
22200	1	0.00116
22300	1	0.00116
22800	1	0.00116
23000	1	0.00116
24800	1	0.00116
25600	1	0.00116
26000	1	0.00116

CL38 ----> CL35

No. of shared pairs: :555

CL38 ----> CL8

No. of shared pairs: :59

CL38 ----> CL27

No. of shared pairs: :14