Cluster no. 105
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Cluster is part of supercluster: 50
Cluster characteristics:
| size |
336 |
| size_real |
336 |
| ecount |
3045 |
| supercluster |
50 |
| annotations_summary |
|
| pair_completeness |
0.506726457399103 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00297619047619048 |
| satellite_probability |
2.33736515693784e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
120 |
| S9 |
92 |
| S7 |
124 |
comparative analysis - number of edges between species:
|
S8 |
S9 |
S7 |
| S8 |
377 |
292 |
396 |
| S9 |
292 |
216 |
329 |
| S7 |
396 |
329 |
418 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S9 |
S7 |
| S8 |
1.010 |
0.997 |
0.991 |
| S9 |
0.997 |
0.939 |
1.050 |
| S7 |
0.991 |
1.050 |
0.974 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 14 |
53 |
| 1 |
40 |
| 54 |
3 |
| 28 |
2 |
| 67 |
2 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 14 |
52 |
0.0571 |
| 1 |
37 |
0.0134 |
| 67 |
3 |
0.0122 |
| 54 |
2 |
0.00571 |
| 17100 |
2 |
0.0357 |
| 2 |
1 |
0.000495 |
| 12 |
1 |
0.00103 |
| 23 |
1 |
0.001 |
| 28 |
1 |
0.00176 |
|
CL105 ----> CL14
No. of shared pairs: :52
CL105 ----> CL1
No. of shared pairs: :37