Cluster no. 73

Cluster no. 73

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Cluster is part of supercluster: 23

Cluster characteristics:

size	1524
size_real	1524
ecount	7694
supercluster	23
annotations_summary	4.27% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 2.56% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 0.52% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.20% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT 0.13% Class_II/Subclass_2/Helitron:Helitron-HEL2 0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH 0.07% Class_I/LINE:LINE-RT 0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.46257197696737
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000656167979002625
satellite_probability	3.90603663686178e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	523
S9	517
S7	484

comparative analysis - number of edges between species:

	S8	S9	S7
S8	777	789	892
S9	789	829	874
S7	892	874	978

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.989	0.991	1.020
S9	0.991	1.030	0.983
S7	1.020	0.983	0.999

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Helitron Helitron-HEL2 Helitron Helitron-HEL2 2 0.00131

LINE LINE-RT LINE LINE-RT 1 0.00066

Tekay Ty3-GAG Tekay Ty3-GAG 65 0.04265

Reina Ty3-INT Reina Ty3-INT 1 0.00066

Reina Ty3-PROT Reina Ty3-PROT 3 0.00197

Tekay Ty3-PROT Tekay Ty3-PROT 39 0.02559

Tekay Ty3-RT Tekay Ty3-RT 8 0.00525

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 1 0.00066

clusters with similarity:

Cluster	Number of similarity hits

10	51
33	11

clusters connected through mates:

Cluster	Number of shared read pairs	k

10	41	0.0363
33	29	0.0423
1	6	0.00201
64	4	0.00656
2	3	0.00134
721	3	0.0105
2290	3	0.0107
3830	3	0.0106
22	2	0.00119
63	2	0.00237
511	2	0.00697
771	2	0.00705
915	2	0.00703
1040	2	0.00704
3510	2	0.00709
4180	2	0.00709
4820	2	0.0071
5430	2	0.0071
7480	2	0.00712
17600	2	0.00712
18600	2	0.00712
19600	2	0.00712
19900	2	0.00712
23800	2	0.00712
4	1	0.000365
5	1	0.000341
6	1	0.000357
8	1	0.000571
12	1	0.000838
13	1	0.000393
16	1	0.000437
17	1	0.000869
18	1	0.000795
21	1	0.00107
23	1	0.000817
26	1	0.000494
29	1	0.000653
40	1	0.00122
62	1	0.00179
69	1	0.00211
70	1	0.00173
115	1	0.00311
205	1	0.00336
423	1	0.0035
478	1	0.00344
1030	1	0.00355
1230	1	0.00351
1700	1	0.00353
1740	1	0.00355
2730	1	0.00355
3000	1	0.00356
3040	1	0.00355
3440	1	0.00355
3550	1	0.00356
3770	1	0.00356
3770	1	0.00355
4010	1	0.00355
4130	1	0.00355
4810	1	0.00355
4870	1	0.00355
5290	1	0.00355
5650	1	0.00355
6400	1	0.00355
6520	1	0.00355
7330	1	0.00355
7640	1	0.00356
8670	1	0.00356
9200	1	0.00356
9400	1	0.00356
9950	1	0.00356
10100	1	0.00356
10100	1	0.00356
10400	1	0.00356
10900	1	0.00356
11800	1	0.00356
13200	1	0.00356
13400	1	0.00356
15000	1	0.00356
15500	1	0.00356
15800	1	0.00356
18100	1	0.00356
18800	1	0.00356
19800	1	0.00356
19800	1	0.00356
20300	1	0.00356
20600	1	0.00356
21600	1	0.00356
22400	1	0.00356
22600	1	0.00356
24300	1	0.00356
25900	1	0.00356

CL73 ----> CL10

No. of shared pairs: :41

CL73 ----> CL33

No. of shared pairs: :29