Cluster no. 138

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Cluster is part of supercluster: 83

Cluster characteristics:

size 141
size_real 141
ecount 300
supercluster 83
annotations_summary 44.68% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
19.86% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
14.18% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
pair_completeness 0.424242424242424
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00709219858156028
satellite_probability 1.0345154302985e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 35
S9 48
S7 58
comparative analysis - number of edges between species:
S8 S9 S7
S8 15 23 34
S9 23 37 45
S7 34 45 44
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.868 0.913 1.150
S9 0.913 1.010 1.050
S7 1.150 1.050 0.872

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-RH Ivana Ty1-RH 20 0.14
SIRE Ty1-RH SIRE Ty1-RH 63 0.45
SIRE Ty1-RT SIRE Ty1-RT 28 0.20

clusters connected through mates:

Cluster Number of shared
read pairs		 k
170 18 0.36
16 2 0.000982
998 2 0.0597
2900 2 0.0656
21100 2 0.0678
244 1 0.0222
6170 1 0.0333
6380 1 0.0333
20000 1 0.0339
23900 1 0.0339

CL138 ----> CL170

image

No. of shared pairs: :18