Cluster no. 162

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Cluster is part of supercluster: 106

Cluster characteristics:

size 98
size_real 98
ecount 332
supercluster 106
annotations_summary 100.00% organelle/plastid
2.04% Class_I/LINE:LINE-RH
pair_completeness 0.814814814814815
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0102040816326531
satellite_probability 3.28054772597604e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 29
S9 43
S7 26
comparative analysis - number of edges between species:
S8 S9 S7
S8 34.0 50.5 23.5
S9 50.5 50.0 40.5
S7 23.5 40.5 19.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.968 1.100 0.870
S9 1.100 0.835 1.150
S7 0.870 1.150 0.916

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 98 1.00
LINE LINE-RH LINE LINE-RH 2 0.02

clusters connected through mates:

Cluster Number of shared
read pairs		 k
106 3 0.15
1510 3 0.4
235 1 0.0952
370 1 0.1