Cluster no. 44

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Cluster is part of supercluster: 4

Cluster characteristics:

size	4061
size_real	4061
ecount	198507
supercluster	4
annotations_summary	51.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 12.76% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 10.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
pair_completeness	0.727350063802637
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000738734301896085
satellite_probability	9.81425038973844e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1330
S9	1300
S7	1420

comparative analysis - number of edges between species:

	S8	S9	S7
S8	20500	20800	22600
S9	20800	21600	22600
S7	22600	22600	24500

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	0.994	1.010
S9	0.994	1.020	0.991
S7	1.010	0.991	1.000

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 410 0.10096

Galadriel Ty3-INT Galadriel Ty3-INT 1 0.00025

Reina Ty3-INT Reina Ty3-INT 6 0.00148

Tekay Ty3-INT Tekay Ty3-INT 2072 0.51022

Tekay Ty3-RH Tekay Ty3-RH 518 0.12755

clusters with similarity:

Cluster	Number of similarity hits

33	1790
36	966
46	106
64	32
21	16
1	1
25	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

36	218	0.226
33	213	0.293
21	14	0.0144
1	8	0.00265
12	8	0.00648
13	7	0.00271
10	5	0.00427
22	3	0.00174
1280	3	0.00924
4	2	0.000719
18	2	0.00154
23	2	0.00158
25	2	0.00274
32	2	0.00109
61	2	0.00244
3260	2	0.00622
12500	2	0.00622
2	1	0.000437
9	1	0.000415
16	1	0.00043
17	1	0.00084
24	1	0.000667
28	1	0.0012
41	1	0.000778
42	1	0.00155
46	1	0.0014
51	1	0.0017
53	1	0.00161
58	1	0.00241
63	1	0.00113
64	1	0.00154
66	1	0.00171
70	1	0.00161
92	1	0.00242
94	1	0.00287
541	1	0.00303
642	1	0.00306
3150	1	0.0031
6220	1	0.00311
6270	1	0.00311
11100	1	0.00311
13600	1	0.00311
23800	1	0.00311

CL44 ----> CL36

No. of shared pairs: :218

CL44 ----> CL33

No. of shared pairs: :213

CL44 ----> CL21

No. of shared pairs: :14