Cluster no. 174

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Cluster is part of supercluster: 118

Cluster characteristics:

size 85
size_real 85
ecount 468
supercluster 118
annotations_summary 100.00% organelle/plastid
pair_completeness 0.73469387755102
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0117647058823529
satellite_probability 9.7369044902173e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 29
S9 29
S7 27
comparative analysis - number of edges between species:
S8 S9 S7
S8 54 58.0 49.0
S9 58 45.0 57.5
S7 49 57.5 40.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.975 1.050 0.972
S9 1.050 0.818 1.140
S7 0.972 1.140 0.872

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 85 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
110 7 0.35
118 4 0.235
243 1 0.105
270 1 0.0909