Cluster no. 113

Go back to cluster table

Cluster is part of supercluster: 58

Cluster characteristics:

size 252
size_real 252
ecount 2158
supercluster 58
annotations_summary
pair_completeness 0.536585365853659
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.341269841269841
satellite_probability 2.50705327244209e-08
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 77
S9 90
S7 85
comparative analysis - number of edges between species:
S8 S9 S7
S8 165 236 199
S9 236 307 280
S7 199 280 256
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.987 1.030 0.974
S9 1.030 0.978 0.998
S7 0.974 0.998 1.020

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
41 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
41 13 0.013
180 8 0.152
148 6 0.108
201 4 0.0833
3440 3 0.075
6100 2 0.0506
2 1 0.000499
12 1 0.00105
241 1 0.0194
1790 1 0.0256
2690 1 0.0253
4160 1 0.025
5480 1 0.0253
7830 1 0.0256
10300 1 0.0256
10700 1 0.0256
15900 1 0.0256
21400 1 0.0256
22200 1 0.0256
23200 1 0.0256

CL113 ----> CL41

image

No. of shared pairs: :13