Cluster no. 68

Cluster no. 68

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Cluster is part of supercluster: 6

Cluster characteristics:

size	1679
size_real	1679
ecount	83891
supercluster	6
annotations_summary	0.60% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT 0.06% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
pair_completeness	0.570626753975678
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0244192972007147
satellite_probability	6.94149363703657e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	531
S9	569
S7	579

comparative analysis - number of edges between species:

	S8	S9	S7
S8	8170	8920	9190
S9	8920	9580	9930
S7	9190	9930	10100

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.993	1.000	1.010
S9	1.000	0.994	1.000
S7	1.010	1.000	0.991

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-GAG Ale Ty1-GAG 1 6e-04

Chlamyvir Ty3-RT Chlamyvir Ty3-RT 1 6e-04

Tekay Ty3-RT Tekay Ty3-RT 10 6e-03

clusters with similarity:

Cluster	Number of similarity hits

13	2090
31	498
27	269
43	164
25	159
24	5

clusters connected through mates:

Cluster	Number of shared read pairs	k

13	98	0.0393
25	80	0.125
31	62	0.0675
43	57	0.0633
27	25	0.0149
24	19	0.0135
63	14	0.0176
1	6	0.00205
390	4	0.0167
18	2	0.00166
14800	2	0.00868
24400	2	0.00868
2	1	0.000456
12	1	0.000875
16	1	0.000447
20	1	0.000474
23	1	0.000853
36	1	0.00115
40	1	0.00129
48	1	0.000925
60	1	0.00182
61	1	0.00137
94	1	0.00388
1200	1	0.00431
2590	1	0.00433
3370	1	0.00432
3390	1	0.00434
6280	1	0.00433
7540	1	0.00434
19800	1	0.00434
21000	1	0.00434
24600	1	0.00434

CL68 ----> CL13

No. of shared pairs: :98

CL68 ----> CL25

No. of shared pairs: :80

CL68 ----> CL31

No. of shared pairs: :62

CL68 ----> CL43

No. of shared pairs: :57

CL68 ----> CL27

No. of shared pairs: :25

CL68 ----> CL24

No. of shared pairs: :19

CL68 ----> CL63

No. of shared pairs: :14