Cluster no. 126

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Cluster is part of supercluster: 71

Cluster characteristics:

size 182
size_real 182
ecount 836
supercluster 71
annotations_summary
pair_completeness 0.368421052631579
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00549450549450549
satellite_probability 1.14691457676211e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 53
S9 67
S7 62
comparative analysis - number of edges between species:
S8 S9 S7
S8 75.0 94.5 88.5
S9 94.5 130.0 98.0
S7 88.5 98.0 69.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.942 0.949 1.120
S9 0.949 1.040 0.994
S7 1.120 0.994 0.884

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
24 9
13 6
4 2
63 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
24 20 0.0164
3 9 0.00295
4 6 0.0024
991 5 0.106
5 3 0.00111
13 3 0.0013
8 2 0.00132
48 2 0.00224
1 1 0.000365
11 1 0.000521
15 1 0.000906
18 1 0.000981
21 1 0.00144
22 1 0.00069
25 1 0.00221
28 1 0.00181
75 1 0.00334
134 1 0.0106
3020 1 0.0233
11400 1 0.0233
15800 1 0.0233
18300 1 0.0233
24400 1 0.0233

CL126 ----> CL24

image

No. of shared pairs: :20