Cluster no. 79

Cluster no. 79

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Cluster is part of supercluster: 29

Cluster characteristics:

size	1265
size_real	1265
ecount	7427
supercluster	29
annotations_summary	0.16% Class_I/LINE:LINE-ENDO 0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
pair_completeness	0.538929440389294
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000790513833992095
satellite_probability	1.65508917325132e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	437
S9	410
S7	418

comparative analysis - number of edges between species:

	S8	S9	S7
S8	943	909	813
S9	909	767	759
S7	813	759	755

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.986	1.040	0.974
S9	1.040	0.961	0.995
S7	0.974	0.995	1.040

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-ENDO LINE LINE-ENDO 2 0.00158

Ale Ty1-INT Ale Ty1-INT 1 0.00079

Tekay Ty3-GAG Tekay Ty3-GAG 1 0.00079

clusters with similarity:

Cluster	Number of similarity hits

16	67
6	24
37	8
78	2
22	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

16	31	0.0141
37	19	0.0238
6	15	0.00553
129	15	0.0617
387	8	0.0398
207	6	0.0292
78	5	0.0127
739	5	0.0256
1	3	0.00104
63	3	0.00398
1610	3	0.0157
3360	3	0.0157
3590	3	0.0157
6280	3	0.0157
13	2	0.000816
33	2	0.00336
639	2	0.0103
1180	2	0.0103
1420	2	0.0104
2260	2	0.0104
2670	2	0.0104
6810	2	0.0105
10700	2	0.0105
19000	2	0.0105
19700	2	0.0105
20300	2	0.0105
23400	2	0.0105
2	1	0.000464
5	1	0.000352
9	1	0.000439
10	1	0.000962
11	1	0.000484
12	1	0.000906
15	1	0.000799
18	1	0.000857
21	1	0.00119
22	1	0.000626
24	1	0.00073
25	1	0.00167
29	1	0.000694
46	1	0.00171
53	1	0.00204
55	1	0.00221
56	1	0.0012
61	1	0.00145
67	1	0.00262
84	1	0.00238
86	1	0.00259
103	1	0.00449
229	1	0.00484
230	1	0.00512
516	1	0.00501
1390	1	0.00517
1870	1	0.00525
2540	1	0.00521
2670	1	0.00526
3570	1	0.00522
3630	1	0.00522
4150	1	0.00522
5540	1	0.00524
5600	1	0.00524
5760	1	0.00526
7640	1	0.00525
11000	1	0.00525
16600	1	0.00525
17400	1	0.00525
17500	1	0.00525
20900	1	0.00525
22500	1	0.00525
23200	1	0.00525
23400	1	0.00525

CL79 ----> CL16

No. of shared pairs: :31

CL79 ----> CL37

No. of shared pairs: :19

CL79 ----> CL6

No. of shared pairs: :15

CL79 ----> CL129

No. of shared pairs: :15