Cluster no. 89

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Cluster is part of supercluster: 35

Cluster characteristics:

size 829
size_real 829
ecount 18346
supercluster 35
annotations_summary 0.12% organelle/plastid
pair_completeness 0.691836734693878
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0928829915560917
satellite_probability 2.26457495169281e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 305
S9 235
S7 289
comparative analysis - number of edges between species:
S8 S9 S7
S8 2520 1910 2430
S9 1910 1360 1750
S7 2430 1750 2290
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.985 1.020 1.000
S9 1.020 0.992 0.989
S7 1.000 0.989 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0012

clusters with similarity:

Cluster Number of similarity hits
7 253
1 104
28 18
87 4
8 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
7 73 0.0787
1 36 0.013
6 3 0.00115
22500 2 0.0261
8 1 0.000646
10 1 0.00108
11 1 0.000512
12 1 0.00101
13 1 0.000428
16 1 0.00048
22 1 0.000675
28 1 0.0017
37 1 0.00146
53 1 0.00266
2840 1 0.0132

CL89 ----> CL7

image

No. of shared pairs: :73

CL89 ----> CL1

image

No. of shared pairs: :36