Cluster no. 62

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Cluster is part of supercluster: 2

Cluster characteristics:

size	2048
size_real	2048
ecount	31357
supercluster	2
annotations_summary	4.79% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 1.37% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT 1.12% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.39% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT 0.29% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT 0.10% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH 0.05% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
pair_completeness	0.572964669738863
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00146484375
satellite_probability	1.13992396794032e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	661
S9	678
S7	709

comparative analysis - number of edges between species:

	S8	S9	S7
S8	3140	3340	3430
S9	3340	3460	3700
S7	3430	3700	3820

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.00	1.010	0.99
S9	1.01	0.984	1.01
S7	0.99	1.010	1.00

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-INT Ivana Ty1-INT 1 0.00049

Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00049

CRM Ty3-INT CRM Ty3-INT 2 0.00098

Galadriel Ty3-INT Galadriel Ty3-INT 6 0.00293

Reina Ty3-INT Reina Ty3-INT 23 0.01123

Tekay Ty3-INT Tekay Ty3-INT 98 0.04785

Tekay Ty3-PROT Tekay Ty3-PROT 2 0.00098

TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 1 0.00049

Tekay Ty3-RH Tekay Ty3-RH 3 0.00146

TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 1 0.00049

Tcn1 Ty3-RT Tcn1 Ty3-RT 8 0.00391

Tekay Ty3-RT Tekay Ty3-RT 28 0.01367

clusters with similarity:

Cluster	Number of similarity hits

1	492
12	277
34	117
42	79
45	49
28	5
15	3
30	3

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	181	0.0608
12	137	0.115
34	91	0.163
42	24	0.0399
30	23	0.0257
45	16	0.0291
15	10	0.00747
13	3	0.00118
4270	3	0.0107
18	2	0.00159
24	2	0.00137
50	2	0.00396
9	1	0.000423
14	1	0.000882
16	1	0.000438
23	1	0.000819
28	1	0.00127
29	1	0.000654
33	1	0.00146
35	1	0.000827
46	1	0.00149
58	1	0.00269
73	1	0.00179
691	1	0.00353
2520	1	0.00357
11400	1	0.00358
20800	1	0.00358
21800	1	0.00358