Cluster no. 307

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Cluster is part of supercluster: 204

Cluster characteristics:

size 175
size_real 175
ecount 323
supercluster 204
annotations_summary
pair_completeness 0.33587786259542
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00571428571428571
satellite_probability 1.17646958017996e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 1
S5 68
S4 53
S7 0
S9 0
S6 53
S2 0
S1 0
S3 0
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 0.5 0 0 0 0.0 0 0 0
S5 0.5 34.0 41 0 0 36.5 0 0 0
S4 0.0 41.0 30 0 0 31.0 0 0 0
S7 0.0 0.0 0 0 0 0.0 0 0 0
S9 0.0 0.0 0 0 0 0.0 0 0 0
S6 0.0 36.5 31 0 0 41.0 0 0 0
S2 0.0 0.0 0 0 0 0.0 0 0 0
S1 0.0 0.0 0 0 0 0.0 0 0 0
S3 0.0 0.0 0 0 0 0.0 0 0 0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.00 2.880 0.000 NA NA 0.000 NA NA NA
S5 2.88 0.875 1.160 NA NA 0.970 NA NA NA
S4 0.00 1.160 0.931 NA NA 0.905 NA NA NA
S7 NA NA NA NA NA NA NA NA NA
S9 NA NA NA NA NA NA NA NA NA
S6 0.00 0.970 0.905 NA NA 1.120 NA NA NA
S2 NA NA NA NA NA NA NA NA NA
S1 NA NA NA NA NA NA NA NA NA
S3 NA NA NA NA NA NA NA NA NA

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
281 14 0.124
8770 3 0.0659
4770 2 0.043
37000 2 0.0449
39 1 0.000998
95 1 0.00169
326 1 0.0132
3070 1 0.0211
3350 1 0.0215
3830 1 0.0213
6230 1 0.0217
6300 1 0.0222
8840 1 0.022
9780 1 0.0225
17800 1 0.0222
23700 1 0.0225
24800 1 0.0225
30700 1 0.0225
31300 1 0.0225
40800 1 0.0225
42600 1 0.0225
45700 1 0.0225
47500 1 0.0225
51600 1 0.0225

CL307 ----> CL281

image

No. of shared pairs: :14