Cluster no. 306
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Cluster is part of supercluster: 203
Cluster characteristics:
| size |
175 |
| size_real |
175 |
| ecount |
378 |
| supercluster |
203 |
| annotations_summary |
|
| pair_completeness |
0.268115942028985 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00571428571428571 |
| satellite_probability |
1.12274535709515e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
0 |
| S5 |
0 |
| S4 |
0 |
| S7 |
0 |
| S9 |
0 |
| S6 |
0 |
| S2 |
47 |
| S1 |
74 |
| S3 |
54 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.0 |
0.0 |
| S5 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.0 |
0.0 |
| S4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.0 |
0.0 |
| S7 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.0 |
0.0 |
| S9 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.0 |
0.0 |
| S6 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0.0 |
0.0 |
| S2 |
0 |
0 |
0 |
0 |
0 |
0 |
43 |
44.0 |
34.0 |
| S1 |
0 |
0 |
0 |
0 |
0 |
0 |
44 |
61.0 |
43.5 |
| S3 |
0 |
0 |
0 |
0 |
0 |
0 |
34 |
43.5 |
31.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S5 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S4 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S6 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S2 |
NA |
NA |
NA |
NA |
NA |
NA |
1.110 |
0.926 |
0.979 |
| S1 |
NA |
NA |
NA |
NA |
NA |
NA |
0.926 |
1.050 |
1.020 |
| S3 |
NA |
NA |
NA |
NA |
NA |
NA |
0.979 |
1.020 |
0.995 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 2090 |
6 |
0.109 |
| 2400 |
4 |
0.0734 |
| 2440 |
4 |
0.0721 |
| 6130 |
2 |
0.0385 |
| 6670 |
2 |
0.0377 |
| 19900 |
2 |
0.0385 |
| 54300 |
2 |
0.0388 |
| 7 |
1 |
0.000672 |
| 58 |
1 |
0.0016 |
| 229 |
1 |
0.00556 |
| 3220 |
1 |
0.0187 |
| 10500 |
1 |
0.0194 |
| 14900 |
1 |
0.0192 |
| 16600 |
1 |
0.0192 |
| 19900 |
1 |
0.0192 |
| 27000 |
1 |
0.0194 |
| 38100 |
1 |
0.0194 |
|