Cluster no. 305
Go back to cluster table
Cluster is part of supercluster: 202
Cluster characteristics:
| size |
177 |
| size_real |
177 |
| ecount |
614 |
| supercluster |
202 |
| annotations_summary |
|
| pair_completeness |
0.439024390243902 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00564971751412429 |
| satellite_probability |
9.71787494816826e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
1 |
| S5 |
0 |
| S4 |
2 |
| S7 |
0 |
| S9 |
1 |
| S6 |
0 |
| S2 |
60 |
| S1 |
55 |
| S3 |
58 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0.0 |
0 |
0.0 |
0 |
0.5 |
0 |
0.0 |
0.0 |
0.0 |
| S5 |
0.0 |
0 |
0.0 |
0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S4 |
0.0 |
0 |
0.0 |
0 |
0.0 |
0 |
0.5 |
1.5 |
0.5 |
| S7 |
0.0 |
0 |
0.0 |
0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S9 |
0.5 |
0 |
0.0 |
0 |
0.0 |
0 |
0.0 |
0.5 |
0.0 |
| S6 |
0.0 |
0 |
0.0 |
0 |
0.0 |
0 |
0.0 |
0.0 |
0.0 |
| S2 |
0.0 |
0 |
0.5 |
0 |
0.0 |
0 |
73.0 |
59.0 |
77.0 |
| S1 |
0.0 |
0 |
1.5 |
0 |
0.5 |
0 |
59.0 |
54.0 |
69.0 |
| S3 |
0.0 |
0 |
0.5 |
0 |
0.0 |
0 |
77.0 |
69.0 |
70.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
NA |
0.000 |
NA |
614.00 |
NA |
0.000 |
0.000 |
0.000 |
| S5 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S4 |
0 |
NA |
0.000 |
NA |
0.00 |
NA |
0.586 |
2.000 |
0.567 |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
614 |
NA |
0.000 |
NA |
0.00 |
NA |
0.000 |
1.670 |
0.000 |
| S6 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S2 |
0 |
NA |
0.586 |
NA |
0.00 |
NA |
1.020 |
0.940 |
1.040 |
| S1 |
0 |
NA |
2.000 |
NA |
1.67 |
NA |
0.940 |
0.979 |
1.060 |
| S3 |
0 |
NA |
0.567 |
NA |
0.00 |
NA |
1.040 |
1.060 |
0.917 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 100 |
10 |
0.0216 |
| 5940 |
2 |
0.0541 |
| 8810 |
2 |
0.0548 |
| 23 |
1 |
0.000858 |
| 98 |
1 |
0.00223 |
| 108 |
1 |
0.00225 |
| 129 |
1 |
0.00373 |
| 143 |
1 |
0.00221 |
| 1180 |
1 |
0.0244 |
| 1680 |
1 |
0.025 |
| 5580 |
1 |
0.0286 |
| 12900 |
1 |
0.0278 |
| 15400 |
1 |
0.0278 |
| 33000 |
1 |
0.0282 |
|
CL305 ----> CL100
No. of shared pairs: :10