Cluster no. 304
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Cluster is part of supercluster: 201
Cluster characteristics:
| size |
177 |
| size_real |
177 |
| ecount |
334 |
| supercluster |
201 |
| annotations_summary |
|
| pair_completeness |
0.229166666666667 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00564971751412429 |
| satellite_probability |
1.02273405921547e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
1 |
| S5 |
1 |
| S4 |
0 |
| S7 |
0 |
| S9 |
1 |
| S6 |
0 |
| S2 |
49 |
| S1 |
70 |
| S3 |
55 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.5 |
0.5 |
| S5 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
0.5 |
| S4 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
0.0 |
| S7 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
0.0 |
| S9 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
0.5 |
| S6 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
0.0 |
| S2 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
26 |
39.0 |
37.0 |
| S1 |
0.5 |
0.0 |
0 |
0 |
0.0 |
0 |
39 |
37.0 |
37.0 |
| S3 |
0.5 |
0.5 |
0 |
0 |
0.5 |
0 |
37 |
37.0 |
41.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0.00 |
0.00 |
NA |
NA |
0.00 |
NA |
0.000 |
1.470 |
1.430 |
| S5 |
0.00 |
0.00 |
NA |
NA |
0.00 |
NA |
0.000 |
0.000 |
2.870 |
| S4 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
0.00 |
0.00 |
NA |
NA |
0.00 |
NA |
0.000 |
0.000 |
2.870 |
| S6 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S2 |
0.00 |
0.00 |
NA |
NA |
0.00 |
NA |
0.835 |
1.130 |
1.040 |
| S1 |
1.47 |
0.00 |
NA |
NA |
0.00 |
NA |
1.130 |
0.959 |
0.935 |
| S3 |
1.43 |
2.87 |
NA |
NA |
2.87 |
NA |
1.040 |
0.935 |
1.010 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 57 |
27 |
0.0316 |
| 352 |
10 |
0.115 |
| 7970 |
4 |
0.0696 |
| 1800 |
3 |
0.05 |
| 168 |
2 |
0.00555 |
| 12900 |
2 |
0.0351 |
| 19800 |
2 |
0.0351 |
| 37200 |
2 |
0.0354 |
| 69900 |
2 |
0.0354 |
| 2250 |
1 |
0.0164 |
| 2400 |
1 |
0.0171 |
| 7000 |
1 |
0.0172 |
| 16900 |
1 |
0.0175 |
| 18900 |
1 |
0.0175 |
| 28300 |
1 |
0.0177 |
| 29000 |
1 |
0.0177 |
| 29100 |
1 |
0.0177 |
| 44700 |
1 |
0.0177 |
|
CL304 ----> CL57
No. of shared pairs: :27
CL304 ----> CL352
No. of shared pairs: :10