Cluster no. 302
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Cluster is part of supercluster: 199
Cluster characteristics:
| size |
183 |
| size_real |
183 |
| ecount |
536 |
| supercluster |
199 |
| annotations_summary |
|
| pair_completeness |
0.5 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00546448087431694 |
| satellite_probability |
7.48572094908218e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
2 |
| S5 |
68 |
| S4 |
61 |
| S7 |
0 |
| S9 |
0 |
| S6 |
50 |
| S2 |
0 |
| S1 |
0 |
| S3 |
2 |
comparative analysis - number of edges between species:
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0 |
2.0 |
6.0 |
0 |
0 |
2.0 |
0 |
0 |
0.0 |
| S5 |
2 |
98.0 |
69.5 |
0 |
0 |
49.0 |
0 |
0 |
0.0 |
| S4 |
6 |
69.5 |
43.0 |
0 |
0 |
45.5 |
0 |
0 |
0.5 |
| S7 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S9 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S6 |
2 |
49.0 |
45.5 |
0 |
0 |
45.0 |
0 |
0 |
0.0 |
| S2 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S1 |
0 |
0.0 |
0.0 |
0 |
0 |
0.0 |
0 |
0 |
0.0 |
| S3 |
0 |
0.0 |
0.5 |
0 |
0 |
0.0 |
0 |
0 |
1.0 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S5 |
S4 |
S7 |
S9 |
S6 |
S2 |
S1 |
S3 |
| S8 |
0.000 |
0.491 |
1.960 |
NA |
NA |
0.758 |
NA |
NA |
0.00 |
| S5 |
0.491 |
1.100 |
1.040 |
NA |
NA |
0.849 |
NA |
NA |
0.00 |
| S4 |
1.960 |
1.040 |
0.852 |
NA |
NA |
1.050 |
NA |
NA |
1.09 |
| S7 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S9 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S6 |
0.758 |
0.849 |
1.050 |
NA |
NA |
1.200 |
NA |
NA |
0.00 |
| S2 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S1 |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
NA |
| S3 |
0.000 |
0.000 |
1.090 |
NA |
NA |
0.000 |
NA |
NA |
238.00 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 43 |
11 |
0.00854 |
| 3250 |
5 |
0.145 |
| 28 |
3 |
0.00281 |
| 3090 |
3 |
0.087 |
| 67 |
2 |
0.00226 |
| 71 |
2 |
0.00209 |
| 8060 |
2 |
0.0615 |
| 14600 |
2 |
0.0625 |
| 31300 |
2 |
0.0635 |
| 2 |
1 |
0.000634 |
| 13 |
1 |
0.000644 |
| 2860 |
1 |
0.0286 |
| 8920 |
1 |
0.0308 |
| 15100 |
1 |
0.0323 |
| 60800 |
1 |
0.0317 |
|
CL302 ----> CL43
No. of shared pairs: :11