Cluster no. 301

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Cluster is part of supercluster: 198

Cluster characteristics:

size 189
size_real 189
ecount 318
supercluster 198
annotations_summary
pair_completeness 0.125
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00529100529100529
satellite_probability 6.16948676651695e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 0
S5 1
S4 0
S7 1
S9 0
S6 0
S2 58
S1 66
S3 63
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0 0.0 0 0.0 0 0 0.0 0.0 0
S5 0 0.0 0 0.0 0 0 0.0 1.5 0
S4 0 0.0 0 0.0 0 0 0.0 0.0 0
S7 0 0.0 0 0.0 0 0 1.0 0.5 0
S9 0 0.0 0 0.0 0 0 0.0 0.0 0
S6 0 0.0 0 0.0 0 0 0.0 0.0 0
S2 0 0.0 0 1.0 0 0 45.0 32.5 37
S1 0 1.5 0 0.5 0 0 32.5 37.0 31
S3 0 0.0 0 0.0 0 0 37.0 31.0 29
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 NA NA NA NA NA NA NA NA NA
S5 NA 0.0 NA 0.00 NA NA 0.000 3.100 0.000
S4 NA NA NA NA NA NA NA NA NA
S7 NA 0.0 NA 0.00 NA NA 1.840 1.030 0.000
S9 NA NA NA NA NA NA NA NA NA
S6 NA NA NA NA NA NA NA NA NA
S2 NA 0.0 NA 1.84 NA NA 1.070 0.873 1.050
S1 NA 3.1 NA 1.03 NA NA 0.873 1.120 0.992
S3 NA 0.0 NA 0.00 NA NA 1.050 0.992 0.980

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
488 4 0.0428
3050 2 0.0261
18500 2 0.0267
42 1 0.00153
131 1 0.00242
174 1 0.00368
433 1 0.00985
995 1 0.012
1900 1 0.0129
1980 1 0.0126
2190 1 0.013
3500 1 0.0129
7160 1 0.0132
18500 1 0.0133
18600 1 0.0133
18700 1 0.0133
25800 1 0.0134
35300 1 0.0134
39800 1 0.0134
40300 1 0.0134
60300 1 0.0134
67500 1 0.0134
69700 1 0.0134
69800 1 0.0134
69800 1 0.0134